Array 1 15685-15297 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNUP01000015.1 Pseudomonas sp. EpS/L25 strain EpSL25 Scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15684 28 100.0 32 ............................ AGGACGGCGCAGCCGGCCGACCTGGAGCGCGT 15624 28 100.0 32 ............................ CTCGTCGATGGCCCTGTCCCAGGCCTCATCCG 15564 28 100.0 32 ............................ GGTCTCCCCCCTCCAGCAGCACAGGCGGGTTC 15504 28 100.0 32 ............................ ATACTGATCAGGAAATCGAAGCGCTAATGCCC 15444 28 96.4 32 ...........C................ TACGCCAGCTGTTGGCTCAAATGCCACGAGCC 15384 28 89.3 32 ....G......C..........C..... TCATCCCCATGCGCGGCGGCAGTCGGGGCAAT 15324 28 92.9 0 ......C......C.............. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGCCATGCCTTCGCCACCGACGCCCTGGCCCTGCATTACGCCCGGCAGGCGATCGATGCCGGCCTGGACCAGCAGGTCGAGCCCGAGCTACGCGCCTTCTTCTATCTGCCATTCGAGCATTCCGAAGCCCTGGTCGATCAGCACCGCTCTCTTGAATTGTTCGAGGCCCTGGGCATCGAGCACTACCGCAGCTACGCCCAGGCGCATCTGGACGTGATCGCCCAGTTCGGGCGCTTTCCACACCGAAATCGGGCGCTGGGCCGGATCGATACAGCGGAAGAACAGGCTTGGCTGGATGCAGGTGGGGGATTCTAAAAGGAGGCTTTAGATCGGCGCCTGTCCGGTCTCGGCAAATGGCGCCGCGTTCATACCCTCTTTTTTGAGGCCCACCTTACAGCGATAAAAATCAATGACTTGGAAGAGGCCGTGAAAAAAGGGTTTTGAGAGGAAAAACCGATTAGTCTTCGATAGATCAAGGTGTTATGTAGAACTAGCTCTA # Right flank : CACGCCGCCCTCGCCACTCAGCTCGCCTCTGGCTTCACTGCCGCCTAGGCAGCAAACACCCTTGCCTCCTCCGGCCTAACCGATTCCCACCCCATCCCGCCACTCCACCACCAGATCCGCCCGCGCCCGGTCGCCGTCGATCAGTCGGGCATTGGGCTCGTCGGTGCTCGCCACCCAGGCTTCGGCCTCCGCGCGGCTGCGGCCGAAGTGCATGTGCCGGGCGACCAGGCGTGCGCGACGCTCCTCGGGGTCGACGCGCACGTACCAGCACTCGTCGAACACGTCCGCCACGTCGCGCCAAGGCGCCTGGGTCAGCAGCAGGTAGTTGCCTTCGCTGATCACTAGTTGCGTCTCCGCATGGACGGGGATGGCGTTGGCGATGGGTTCCTCGATCTCGCGATTGAACAGCGGCGCATAGACGGTCTCGCCTGCCACTGGCGACTTCAGCCGCTGCAGCAGGGCGCGATAGCCGCGGGCGTCGAAGGTGTCCGGGGCGCCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 17330-16882 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNUP01000015.1 Pseudomonas sp. EpS/L25 strain EpSL25 Scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17329 28 100.0 32 ............................ TTCTACGACCCGAATGCCTCGGTCGGAGTTGC 17269 28 100.0 32 ............................ TGGAAGGCTGCCGCGGTCTGCTCGGCGCGCTC 17209 28 100.0 32 ............................ GGCCGATGACCGGTACGGTACGGATTGCCTGA 17149 28 100.0 32 ............................ CAGCCGTATCGACAGCTTTCTTGACTCCCATT 17089 28 100.0 32 ............................ GCCGCCCTGCTGGAGCTGCGCGCACTCATGGG 17029 28 100.0 32 ............................ CGAGAATCTTGCAGGAAAAGACCAGCCAAATG 16969 28 92.9 32 ...........T.C.............. CAAGGTGTGCAGCGTAAAGCACCGAAATGGAA 16909 28 85.7 0 ............AC.......CC..... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.3 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : AGGCCCTGGACCGGCTCCTGGCGCTGGACTGGCTCACCGGCATGCGCGACCACCTGCACCTCGGCGCCCTGACCCCGATACCGGCCCAGGTCCGCTGGCGCCAGGTCAGCCGCGTCCAGGTGGACAGCAACCCCGACCGTCTCCGCCGCCGCCTGATCAAGCGCCATGGCCTCAGCGAAACGGAGGCCCGCCAACGCATCCCCGACAGCGCCGCCAAGCGCTGCGCCCTGCCCTTCGTGACCCTGCGCAGCAACGGCAACGGCCAGCGCTTCCCCCTGTTCATCCGCCACGGCCCGTTGCTGGAGGCGCCCATCCCCGGCACCTTCAACCGCTACGGCCTGAGCACCACGGCCACCGTGCCCTGGTTCTGACCCTTTTTTCTGAGCGCCCAGGTGCCACCTGTAAAATCAAGGGGTTACGGAAGGCGCAGAAAAAAGGTTGGAGAGGTTAAAAAGCCGCCTAAGTCTTTCGGATCAAGAGCTTGGGTGGTTTTGGGTCTA # Right flank : CTAGCACCCACGACGGCTAAGCCCCCAGCGCTGCCAGCACATGCACGGCGTCGTTCTTCAGCGCTACCAACAGCGCCTTCGCCGGCCCAGTGGGTTCGCGCCGGCTCTGTTCCCAATTGCGCAACGTACCGACGTCGATATTGAGCTTCCTAGCGAACTGCGCCTGGCTCAGTCCCGTGTTCTTGCGCATCTGCTTGATCTGCAGGGCATCGATGTGGAATTCACGGGGAGGTTGCCGCTCACCCCGGACGATCTCGTCCATTTGGGTAACGCTTTCCATGAGGTCATCCAAGAACCTGGTCATACGGTCTATCTCCACTTTTCGGGGCCTTCAAGGCTATCCGGTCCTCGACGGAGAGGTCGTCCTGCTTACGCGGCCGTGTATGAAATAGCCGTCTGTCTCGCCGCACCAAGCAGTCGTTATAAGCTACGTCGAGTGCAACAACCACTCAGGCAACCCGCGCGACTGGGAAGACAGCATGCAACCACAGGAAGTCGTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 27075-27762 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNUP01000015.1 Pseudomonas sp. EpS/L25 strain EpSL25 Scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27075 28 100.0 32 ............................ ATCAGCCACATCCAGACGGGCTATGGCCTGCC 27135 28 100.0 32 ............................ TTCTGCTTTCAACGTAGCCTGCAGCTCAGACA 27195 28 100.0 32 ............................ AGGTACTCGGAGCTGCAGAAAGCCAAGCCATC 27255 28 100.0 32 ............................ GCATACGCCCACGGCCCGAGCGCCATGCGATC 27315 28 100.0 32 ............................ ACCCGTTGGCGCGGGATTTCGTGGGGTCAGGT 27375 28 100.0 2 ............................ TG Deletion [27405] 27405 28 60.7 2 C.GA.TCT............TG.C.GC. GC Deletion [27435] 27435 28 100.0 32 ............................ TTGGTGCGCATGTCCACGGCTTTGCCGTAGCT 27495 28 100.0 32 ............................ GTTGCCGGCCAGCAGTTCTCGCCCTCGACTAT 27555 28 100.0 32 ............................ TTTCGCGAGCTGCTCGACGATGCCGGCGAGCT 27615 28 100.0 32 ............................ CGGCGGACGAACTGCCCAACAGGATGCACGCC 27675 28 96.4 32 ............T............... TATGGCATGGATAAGGGTGATCCCTTCAGCGC 27735 28 75.0 0 ............A........CC.TCGG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 94.8 27 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGCCACCTCCACGTCGATCTCGTTGGCCGAATACAGCGGCGTGCCACCGCCACCGCAGAAACCCACCAGCACACCCGCCCGGGCCAATTCACGCATCGCCGCCTGGGTGATGGAGGTACCAGTGCCGAGCAGCAGGGTAGTGGTGTTGGCGATGGGAATGTTCCAGTACAGCGACTGCTGGCCGGCCTCGGTCACGTACTCCACCCGGCCACCATTCACCAGCACCCGGCAGTGCTGCAGGTAGTAGAGATTGGCGCGCTTGGAGTGCAGGATCGACTTGAGATCGGAAGGGCTGAAATCATCCATGACAGCGTCCCTGATGTCGGTGGCGGGCCTGTCGTCATCTTGGCGCGGCGAGTGGCTGGGCGGAACCCTTTTTTCGGGTTGTTTAGCGAGGCCTTTGAAATCAAGGGGTTAGGGAGGGAGCTAAAAAGAGGGTTTGGTGGCCGAAAAGAGCGCTGAAAGCTGTTGTATCAAGGGGTTGGGCGGGAAATACTCTA # Right flank : GGGTTCCACGTGGAACCCCTCAGCCCCTACCCACATACGGCATCTTGGTCGCCATCACCGTCAGCGTCTGAACGTTGGCGTCCAGGGGCAGGCTGGCCATGTAGCGGACGGCGTCGGCGACGTGCCTGACGTCCATGCGCGGCTCCACGGCGGTGCTGCCGTCGGCCTGGAGCACGCCCTTGGCCATGCGTTCGGTCATCTCGGTGGCGGCGTTGCCGATATCGATCTGGCCGCAGGCGATGTCGAAGGGGCGGCCGTCCAGGGCCAGGGCCTTGGTCAGGCCGGCGACGGCGTGCTTGGTGGCGGTGTAGGGCGCGCTGAAGGGGCGCGGGGTGTGGGCGGAGATGGAGCCGTTGTTAATGATGCGGCCACCCCGTGGCGACTGTTCGCGCATCAGGGCGAAGGCGGCGCGGCTGCAGAGGAAGACGCCGGTGAGGTTGGTGTTGACCGCGCGGTGCCAGGCGTCCAGTTCCAGCTCGTCGATGGGCACCGCCGGGGCG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.46, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //