Array 1 1052974-1055808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037894.1 Salmonella enterica strain FSW0104 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1052974 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 1053035 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 1053096 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 1053157 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 1053218 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 1053279 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 1053340 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 1053401 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 1053462 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 1053523 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 1053584 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 1053645 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 1053706 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 1053767 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 1053829 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 1053890 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 1053951 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 1054012 29 100.0 32 ............................. ATCGTGTTTATAAAACAACGGTCAATACTCGC 1054073 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 1054134 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 1054195 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 1054256 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 1054317 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 1054378 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 1054439 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 1054500 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 1054561 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 1054622 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 1054683 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 1054744 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 1054805 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 1054866 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 1054927 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 1054988 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 1055049 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 1055110 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 1055171 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 1055232 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 1055293 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 1055354 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 1055415 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 1055476 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 1055537 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 1055598 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 1055659 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 1055720 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 1055781 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1072480-1075320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037894.1 Salmonella enterica strain FSW0104 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1072480 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1072541 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 1072602 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 1072663 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 1072724 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 1072785 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 1072846 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 1072908 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 1072970 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 1073031 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 1073092 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 1073153 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 1073214 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 1073275 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 1073336 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 1073397 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 1073459 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 1073520 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 1073581 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 1073642 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 1073703 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 1073764 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 1073825 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 1073887 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 1073948 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 1074009 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1074070 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 1074131 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 1074192 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 1074253 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 1074314 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 1074375 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 1074436 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 1074497 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 1074558 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 1074619 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 1074680 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 1074741 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 1074802 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 1074863 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 1074924 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 1074985 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 1075046 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 1075107 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 1075168 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 1075230 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1075291 29 96.6 0 A............................ | A [1075317] ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //