Array 1 79156-87181 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB889965.1 Methylosarcina fibrata AML-C10 A3OWDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79156 29 100.0 32 ............................. CAGGCGGTGTGGAAACATTCACATGCTGGAAA 79217 29 100.0 32 ............................. CGGGCCTTGTCCTATACCGTCGATACATCAAG 79278 29 100.0 32 ............................. ACGCCGTATAACGCAGAGCTAACCGGACCGCA 79339 29 100.0 32 ............................. TCGTTCGATCTGCTGACGCGAAAGGCAGGTCC 79400 29 100.0 32 ............................. CCGCCGACGCAGGGCGCCGTATTCTAAGCAGT 79461 29 100.0 33 ............................. CTTACCACCGAACCTCCGGATCTTACCACCGAA 79523 29 100.0 32 ............................. TATTCCAATTCTTTCGCATAGGCCGGATTAAC 79584 29 100.0 32 ............................. GAACAGGGCGTAAATCTCCTGGTTACGGCGGG 79645 29 100.0 32 ............................. TAATCGATACCAACGGCCATAACAGCGGAGTA 79706 29 100.0 32 ............................. TGGTTCCTATGAGCGTCTTGATTGAGGAAGGT 79767 29 100.0 32 ............................. TCACGGAAATATTGAGTGGCGACAACGTCGGC 79828 29 100.0 32 ............................. GCCATACCGGGCTGGGACACGATCAATACCCT 79889 29 100.0 32 ............................. CTGTTCATTCTGGCCAATGAGGTGTTGAGTCG 79950 29 100.0 32 ............................. ACGCACTACGCAAAACCGCCACGGATCGGCAT 80011 29 100.0 32 ............................. ATAACGGTTTAATTTTGGTCATGTTAACTGCC 80072 29 100.0 32 ............................. TCCATCATGGCGATTTCACCTACAGTTTTACA 80133 29 100.0 32 ............................. GCTTTGGCTTTAGATACGCCGATTCCAACTCC 80194 29 100.0 32 ............................. GGGGGCTGATGGCTCAGGTCATTCCATTGGCC 80255 29 100.0 32 ............................. TTGGTTATCAGCATTCAACGGACCTTGTACGG 80316 29 100.0 32 ............................. GCGTGCGCACGGGCGGCGGATATCTATTTTTC 80377 29 100.0 32 ............................. TCATCATCAACGGAACGGAATATCAGGGGGAT 80438 29 100.0 32 ............................. CCAGATGGCGTAATGCCGAGCAGCTTAACCAG 80499 29 100.0 32 ............................. GCGAACGAGACCTATGCCAACGCGGTGAAGGT 80560 29 100.0 32 ............................. AAAATTAGCGCCGCCGTATTAGCAAAAGCATC 80621 29 100.0 32 ............................. GACACAGAGGAGTTTTTCCAGTTCAACACGCC 80682 29 100.0 32 ............................. CCAACAGCAAAGTCGGGCAGACGCTGTTTCAG 80743 29 100.0 32 ............................. GTGAAACTATGGGAATTCTCGCAACAATTTTA 80804 29 100.0 32 ............................. AATAATAAAACCTTCATTACAAATATGTAATG 80865 29 100.0 32 ............................. AAAACCGAACCGGTAACCGAGGCACCCGTCGA 80926 29 100.0 32 ............................. GCGAGGTCATCGGCGGGGCTGGCGGGAAATTG 80987 29 100.0 32 ............................. AAACAACCGGAAACTTACCACCTGACTTATTC 81048 29 100.0 32 ............................. CTGTAAATGTAATTACAGTAATTATCTTTTTC 81109 29 100.0 32 ............................. CCTTATCAACATGCGTAAATTTCCAATATCCC 81170 29 100.0 32 ............................. CCGGTAGTTATCCAGAAACTCGCCGAGCACCA 81231 29 100.0 33 ............................. CAAAATCAAATCCCAATGACGTTTTCTAGATAA 81293 29 100.0 32 ............................. GTATCTTTTTTCGATCAGAGCGCGAGGCTTGT 81354 29 100.0 32 ............................. GTACAGATTTAAATTTGTAGCAACGGGACAAC 81415 29 96.6 32 ............................C AGAAAAAATCCGGCGGCGCCCTCGATTATCTG 81476 29 100.0 32 ............................. GCTTGGACTGTTCTGAACTCTTGATCTTTCAT 81537 29 100.0 32 ............................. ATGAACGCGAACGCCCAATTGCTTTATGACCA 81598 29 100.0 33 ............................. CCGCGCATCGAGGATATGCACGCGCTTGGTCGA 81660 29 100.0 32 ............................. AGAAAATTGGTTACATTGGCGCCAATGCCAAG 81721 29 96.6 32 ............................A GGCATTCAACGGGTAAGCGGAGGCAACATGAG 81782 29 100.0 32 ............................. GACATACAGAGGGCGCTGGGCGAGGTGAAAAG 81843 29 100.0 32 ............................. ATTTATTTGAGATTGTCGCGGCTGCGGGAAAG 81904 29 100.0 32 ............................. AGTACGGGCGGGATTGTCCGGATTTAAAGCGC 81965 29 100.0 32 ............................. AGCGACGGGCAACAGATGGCAGCTTCGTTTAC 82026 29 100.0 32 ............................. CGTATTGGGGGAGGACCGATCAAGGCCGGCAA 82087 29 100.0 32 ............................. ACCTCATTCATTGGCAAAACTGGCACATCTGG 82148 29 100.0 32 ............................. ATCTATTAATTGCGGCCGCGATTGCAAGAAGC 82209 29 100.0 33 ............................. CACTCATTGCCCATTATCGTAACCGAATTAATC 82271 29 100.0 32 ............................. GCCGCGCAACTGGCCGAAGCCGAAAAAACCGG 82332 29 100.0 32 ............................. AATTCACGCTGCTCGTCGACCTCGAGCAGCGG 82393 29 100.0 32 ............................. ACATGGCTGTGCTTAACAACAACAGCACGCAG 82454 29 100.0 32 ............................. TATTTTCTTTTCATCGGCCAGGGCGCGACCCA 82515 29 100.0 32 ............................. CATCAGCAGGGACCATCGTCACGCATCACGCG 82576 29 100.0 32 ............................. TCGGCAATTAAAGCGCAGCATCCGGAGGCTCA 82637 29 100.0 32 ............................. AACCCGTTGAGGTCATGCCTGAATAACGCCAT 82698 29 100.0 32 ............................. CTCAGCGCTTTCCTCCTGAGCGGCCGCCAATT 82759 29 100.0 32 ............................. CCGGGACACCGGTTCCCAGCCATGCCTAGCCA 82820 29 100.0 32 ............................. CATCCAGGGCTTTTGCCTGAGCCTTTAGCATC 82881 29 100.0 32 ............................. GCGGCGGCCGCGTTGTCGTTGGTCGCCGTGTA 82942 29 100.0 32 ............................. ACCGACGACAAAGACGAAAACCAATTCAACCA 83003 29 100.0 32 ............................. CCGATCTTTTGAAAAAGGCGTTCGGAACGGAT 83064 29 100.0 32 ............................. TTACTGATCAGATCCTATCTTCCGCCGGACAA 83125 29 100.0 32 ............................. CACAAGCTGGCGTTCGAAGTGACCAGTCCGGA 83186 29 100.0 32 ............................. TAGACGTGCCGTAAGCGCCTTGAATCAATTGT 83247 29 100.0 32 ............................. ATTGAGTTTGCGCGATCGGCTGGAGAGCTAAA 83308 29 100.0 32 ............................. AACTATGTCAGTTGGGCCTGGATTCTCCGTTG 83369 29 100.0 32 ............................. CAAAAAAAGCTACCTTGACCGCTCTGTCAGAA 83430 29 100.0 32 ............................. CGTACTTATACATGGCTTAACAGTTCCGTTGT 83491 29 100.0 32 ............................. TAGTGGGTTTAGGTGAATATAATTTGTCTGAG 83552 29 100.0 32 ............................. TCGGTCTAAGAGGGTGTTTTTGCGGTGTTTTC 83613 29 100.0 32 ............................. GCACGGTGCCGCTGTTTGATGCGCCTGCAGAC 83674 29 100.0 32 ............................. GATGTATATAATAATATGGTGGCGGTCGAGAA 83735 29 100.0 32 ............................. CTAAACGAATACGACGAGGATGAAAAGCGGGT 83796 29 100.0 32 ............................. CCGCTGTTTTTGAGTTTAATACCATCATATTC 83857 29 100.0 32 ............................. TTTTTAGAGGCCATTAGGCGTGGCAAGGCGAT 83918 29 100.0 33 ............................. CAAGTTACTTATTGCAAGAATGTTTTGCTGGTT 83980 29 96.6 32 ............................A GGTTCGTTCCAGCATTCCCATCTTTTTATGCC 84041 29 100.0 32 ............................. GATTAAAGCATGTAGCGCCTTGCGCCGCAATA 84102 29 100.0 32 ............................. GTGTCAGGCATTCTGGCCAAAGGGACCAAGGC 84163 29 100.0 32 ............................. ACCGCTAATGCCAAGACGGCTAATAAGATGGC 84224 29 100.0 32 ............................. CCATCGCGGCCAAAAACATCCAGGCCATCCAG 84285 29 100.0 32 ............................. CCGGCCCGCTTGCCGGACATTTCAAACCCCGT 84346 29 100.0 32 ............................. CAAAAACTGTTCACCTCGATGGAACTGACCTC 84407 29 100.0 32 ............................. AAGAAAATGCCCAAGTACAAAAACCAAAAGGT 84468 29 100.0 32 ............................. CCAGCCATTCTTGCTCTTCTTCGGACACGGCT 84529 29 100.0 32 ............................. ATATAGATTGTATAAACTGAGACAAATGTCTC 84590 29 100.0 32 ............................. CAGACCATATCCCATAAATCCGGACTCCCCCT 84651 29 100.0 32 ............................. ATCATACCGGCAACTTCCGTTTGAAGATACCC 84712 29 100.0 32 ............................. AGCGCGACGTAAAAGTTGGCCGGGCTCGATTC 84773 29 100.0 32 ............................. CCAGGCATGGCATCCGTTGGGATGGCAATGCG 84834 29 100.0 32 ............................. CAGCGCCTCTTCGATATCCGCTGCCGACTGGC 84895 29 100.0 32 ............................. TCATTCCTTCCGTTTTTCGCCAGTTACAGCAC 84956 29 100.0 32 ............................. AACAATGGCAGGCAGCCAGGGCTAAGTGGGAG 85017 29 100.0 32 ............................. CCATATCCTGGATAGTGTGGTAACGAAGCCAT 85078 29 100.0 32 ............................. GCGTCTCGTCCATCGCCAGTGCTTCGGCTTTC 85139 29 100.0 32 ............................. GCAACCACCTGGGATCATCGATTAAAGTCCTT 85200 29 100.0 32 ............................. TAAAATTTGATCAGTGCCGTCCGACAACGCCG 85261 29 100.0 32 ............................. CTCTTGAATCCTTTATCGATGTGGCTGATTAT 85322 29 100.0 32 ............................. TATACATAGCATTGGCATGTTTCAGTGACATC 85383 29 100.0 32 ............................. AAGTTTTGTTTGATGGGTGCAACCGATGAAGA 85444 29 100.0 32 ............................. GCATTACAAACGATGCGCTAGATGGCGGATGG 85505 29 100.0 32 ............................. ATGCTCCAGAAAACCGCGCTCGATTTCAGCAT 85566 29 100.0 33 ............................. TTCCGTGCCGAGACTGGTGCTGATCGCGTCCAC 85628 29 100.0 32 ............................. ACATAGAACAATCTCAACAAACGGATAATATT 85689 29 96.6 32 ............................A GGACCAATCGATAACCTGTTGCGCGGTAATGC 85750 29 100.0 32 ............................. AATTTCAATTTGTTGATCGACGTCGCCAAGAC 85811 29 100.0 32 ............................. TAGACGTGCCGTAAGCGCCTTGAATCAATTGT 85872 29 100.0 32 ............................. GCCAATGTCTCTAGGTTCTGCGCCTGATTTAT 85933 29 100.0 32 ............................. TAATTATCTGCTGGCATCGGGACATCCAGAGA 85994 29 100.0 32 ............................. TATAAATGGCGGGCCAATGGCAAATGCAAAAC 86055 29 100.0 32 ............................. AAAAACGATGTCATGTATCTGATTCTCGGGTC 86116 29 100.0 32 ............................. ATCGATTGCCAGTTGTTCTTTTAAAGCAACGT 86177 29 100.0 32 ............................. ACGTTGAATTTATAAACTGCGATGTTTGTCTT 86238 29 100.0 32 ............................. ATATCCGCATGGCAGGACAAAAAAGAAATTGC 86299 29 100.0 32 ............................. TCCGCTCTGCGCGTTGATCGGTGGTGGTATCG 86360 29 100.0 32 ............................. GGTACGCACGGGACCGCGTCCGGAGCGTCCAG 86421 29 100.0 32 ............................. GTAACGGTTACAGTTGCAGATTCACTAGCTCC 86482 29 100.0 32 ............................. CAATAAGTGTGCCATTCGGAAAAGTGTGATAG 86543 29 100.0 32 ............................. ATTTTATTCCAATAATTGTTTTGTAGGATACT 86604 29 100.0 32 ............................. GCAAACTTATGGATATGATCCATGAGTTACAG 86665 29 100.0 32 ............................. CACAAACTCTGAGTAATATTAGTTTAACCCAA 86726 29 100.0 32 ............................. AAGCAAACCCTGTGCCAATATTTAAATTGGCA 86787 29 100.0 32 ............................. GCAACCCCGTATATGAATCAATCGGTTCGGCG 86848 29 100.0 32 ............................. TCATCGGAACGCCAGTTCCAGACATTGCAATG 86909 29 100.0 32 ............................. TATGAGATATTGTTATATCCCAAAAATCTTCT 86970 29 100.0 32 ............................. CTTTGCGTGGCAGCAATATTATTAAGATTAAG 87031 29 100.0 32 ............................. AAATTCAGGATCAAATTAACGCCTATTACAAT 87092 29 100.0 32 ............................. TCGGCAGTAGTTAGGGATTGTGCTTGTTCTGT 87153 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 132 29 99.9 32 CCGTTCCCCACGAGCGTGGGGATGAACCG # Left flank : AAAATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGAGCTGGAGATTCCCAAAGCGGCCGAAGAATCGGTACTACCCGCCATTCCCAACCCCGAGAGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCCCCGGTTGCGCGGCCGCCTGGCCGTCTGGCTGATCGAAATTCGCGCCGGCGTTTATGTCGGCGACTTGTCGGTCAGAGTCAGGGACATGATTTGGTCGCAAATCGAAAAGGGTATCGAAGACGGCAATGCCGTGATGGTTTGGTCTACCAATACCGAATCCGGATTCGATTTTATCACCCTGGGCAAAAACCGCCGACTTCCGGTCGAACTGGACGGATTGAAACTGGTTTCGTTTTATCCCGAGGAAGACCCGAAGGATCAAAATGCTCTTTAACAATTTAATCTTAATAAATTGGCAAAAAATCGGTAGAAATTTGAAGGCGATTATTTCGCTTTATTAACAATGTGATAAGATAAGT # Right flank : GTAGTGGTACTAGTAGTCAGTCAATTTAAATCAAAAGGATATATTGGGCTTGTAAGTCACTCTATAGTGGCATTGATGGTTACTGATTGAGGTCAAGCAATGCCAGCTCTTAAATACAAAGTCAATCTGACTGAAGACGAAAAGCGTGGCTTGGAAGCCATGATCAACAAAGGAAAAGCCGCGGCACGCCATCTGACACGCGCGCGAATTTTATTAAAAGCGGCAGCGGGTATTCAGGATAAAGACATTATCCAAGCTTTGGGTGTCTCGGAATCAATGGTGTTGACGACGCGCCAACGGTGTGTGGAAGAAGGCCCGGAAGCCGCCCTGAAAGAACGCCCCCGTCCAGGACGTGCCCCAAAACTGACGGAGAAGCAGGCCGCCCATATTATCGCCTTGGCTTGTAGTGAGGCGCCGACAGGGCATGATCACTGGACCTTGCGGTTGTTGGCGGACAAAGTGGTGGAATTAGCGTATGCCGACCGTTGCAGCTATGAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 88425-89368 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB889965.1 Methylosarcina fibrata AML-C10 A3OWDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88425 29 100.0 32 ............................. CCGCCTTAGCATCATCAGGCAACGTATAATAA 88486 29 100.0 32 ............................. CAAATCAGCTCCGCCGCGATATTGCCCACGTT 88547 29 100.0 32 ............................. AATAAAATCTTTGTAGGTTTCTAATGGAATCA 88608 29 100.0 32 ............................. CCGTTATGTTTAATCCGGTTGCTAAGATGATA 88669 29 100.0 32 ............................. GAATTGTTATATTTTATTTGTTGATTCCACGA 88730 29 100.0 32 ............................. CAAAGTAACGGGAATAATATTTTCCCGTTTCT 88791 29 100.0 32 ............................. CAAGCTATTTGCTTGAATATCCAGCTCTTTGT 88852 29 100.0 32 ............................. CCCCATTCCATAACAGGGCTTTCTCTGGCTTC 88913 29 100.0 32 ............................. CCATTGGTTCTATAGATCACACCGACACAGGA 88974 29 100.0 32 ............................. TGATCCGCATCCTGGTGACTCCGAACAAAGCC 89035 29 100.0 32 ............................. GCGTTTGCCGTGCCGGATGATAAAAAGGCCTA 89096 29 100.0 32 ............................. AATTTCGTTTTCCTGGCCGAGAATGTTAGCGA 89157 29 100.0 32 ............................. CGTCCCGGCATAAAGCCGAGGGCATGACAACC 89218 29 96.6 32 ..........A.................. ACTGAAGGTCAGGCGAAAGCTGCCCATTGCTG 89279 29 100.0 32 ............................. GCAGGCGTGTTGCGACTAACCTTGACCTGAAT 89340 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 CCGTTCCCCACGAGCGTGGGGATGAACCG # Left flank : GAAAGGCGTCTGCGATTTGATGATGATCTGCGAACCTAAACGCGGTTTTCGGCAGGTGGACATCACCGCGCGGCGGACCAAAATCGAATTCGCGCACAGCATGAAGCATATCGCTGAACTTTATCCGGACGCGGCGGTGATCCGGGTGGTGCTGGACAATCTGAATACCCATAAAATGGCGTCTTTGTATGAAGCCTTTCCAGCAGAGCAAGCCCGTGAATTGGCGCGACGGCTGGAGTTCCACTACACGCCCAAGCATGGCAGTTGGCTAAACATCGCTGAGATCGAACTGGCCGTCTTGTCGAACATGTGTTTATCACAGCGGATACCGGACACAGAGAGCCTCCGGCGTGAGGTCGAAGCCAATATCCTACCGCGCAACACCAAGGCGACGCCCGTCAATTGGCGATTTACGACGCAACAGGCACGACGTAAACTGGCTCGCCTGTATCCTTGTGTTTCTTCGTGACTGACTACTAGTAGTAGTAGTTCCATCGGGA # Right flank : GGCGGCGATACCTACCGCGTGCCGCTGGGAAAAATAAACTGCAAGTGACCGGAGACGGGCCTTTTGGACTGGTTTACGGTAATCTGGCCGGGGATCCGGTGAATTCCGTGGCGCATTTGTTGCGCATGGGTTCCGGGGAAGTTCCGCGAGCGGGATCGAATCCGATGGCCGGAGATATCAGTTTAGTGGCCGGATTCCCAGTTATACAAGGCGTAGGGGATATGGATTGATGCACATCGATGCGCACGGCCGGAACGACGTGCTGAATTGATTACCTTCGCTATTGACCGAAAGCGTGCCGTATTCGCGTCTATAGGTATTAAAAAAGGATTGCAACCTAAAGACGGTGAGAAAGTCCGTTACTACCTCGGCGATGGGGATTATGAGGCGTAGATAAGGCAAAATTTTGACAATTTGCCAACCGCCGATTGGGCGCACACGTCGTATGCTATCGACCTAGAAAATAGGCTGCCCATGGGACCTGTGCGGTCAACGTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 943314-946874 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB889965.1 Methylosarcina fibrata AML-C10 A3OWDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 943314 37 100.0 33 ..................................... TTAGCCTCGCTGCCAGACGTTCGGCGCGGCGTT 943384 37 100.0 34 ..................................... CGCCGCTACTTGGCGCTCAACCTGCCGAGTCTCC 943455 37 100.0 32 ..................................... CTATTGCCTGAACCGAATGCGCCGAGCCATCT 943524 37 100.0 35 ..................................... CTCCTGTTTATCCACGCACATCAATAACTTCGAAA 943596 37 100.0 32 ..................................... GTCGGTAAATCTCACCTGTTTCCTGTGGCTCC 943665 37 100.0 34 ..................................... AACCGTGAGCAGTCGAGACAGCAGACCATCAAAA 943736 37 100.0 34 ..................................... CCTCTGCTCTCCGGTTAGTTGTAATCCGTCTCTA 943807 37 100.0 32 ..................................... CCATACTCAGTTTGAAATCGCCGCCGCATACC 943876 37 100.0 34 ..................................... TGGAGGCATTTTTGGCTTGCTCGAACAGGTTTCT 943947 37 100.0 34 ..................................... CATGGCCGACGTTTTTATCTACGCTCAGATCCGA 944018 37 100.0 32 ..................................... GGATTTTTCTTTTTCTCATTGCACCCCAATAG 944087 37 100.0 30 ..................................... CTTTTTGCAGGGCTTCGTTCGAAATATCTT 944154 37 100.0 32 ..................................... AAGGCCCTTCGGGGCCTTTAGTCACACTCCAC 944223 37 100.0 34 ..................................... CTGATATTTGGTTTGTACCCGGTCATGGCGGTTG 944294 37 100.0 34 ..................................... AAAGCAGCCTCGATCATTACCGCTCGGCTTTCAT 944365 37 100.0 34 ..................................... TCTGCAATGACCATCATTGTTTCTGTGTTGTATA 944436 37 100.0 35 ..................................... TGTGTTGTATACGTATGCTTTCATCTCTGCTCTCC 944508 37 100.0 31 ..................................... TAATCTTTCGTCAATAATTGCAAAAAGAGGA 944576 37 100.0 32 ..................................... TTGCTGGTTGAGAAAATGTAGTCATTTCTGCT 944645 37 100.0 32 ..................................... GCAACTCGTTGTCCCACTGTGCGCCCTGCCAT 944714 37 100.0 35 ..................................... GGTTCCAAAAATTGATAAACTTCTGCCAATTCAGA 944786 37 100.0 34 ..................................... GAAACGGAAGTTGTGATGTTTTGAGTAGTCATGG 944857 37 100.0 34 ..................................... GGAGTAAAATTTTCCCGTTTCAGATTGTGCCACT 944928 37 100.0 36 ..................................... CGTGACAAACGCGGTCTTGTTTTTTCAATTGCGTTG 945001 37 100.0 32 ..................................... CTTCGGGGCTTTCTTTTTGTCCGTCGGTTCGC 945070 37 100.0 35 ..................................... TACCGCGCAAAGTGTATAACGCGGTATTGTTTTTG 945142 37 100.0 32 ..................................... TTACCTATATAAGAGATAGGTAGGGGAACTTT 945211 37 100.0 34 ..................................... AACCATTCCAGCCAAAAGAACGGGAATAATATTT 945282 37 100.0 33 ..................................... CCACATAATAACCTTCAATCATGATACTCTCCT 945352 37 100.0 32 ..................................... GAAAGCTTCAAGCGCTTTCAGCGATGAACTCG 945421 37 100.0 32 ..................................... ATAATTTCCCCACCAACATCCTGAAGCATTAC 945490 37 100.0 34 ..................................... GGTTATTACCAACATATCCAATCGCAAAAAGACC 945561 37 100.0 34 ..................................... GGTAGGTACACACAAAGGAGCTATCTTTGTTCGT 945632 37 100.0 34 ..................................... TTTTTTTACTCCGTTATTATGAATACAGCCGGAA 945703 37 100.0 32 ..................................... ATGAACTCGATTGCGTTTGTGAGCTTTCGGCC 945772 37 100.0 35 ..................................... GGCTCTTCTAATTTATATTCCCCAAGCCCAACTAC 945844 37 100.0 35 ..................................... AACGTATTTGGAATACAACGAATTAATGGCAAATT 945916 37 100.0 35 ..................................... TCAGAAAAATCTTCATAAGGATATGTTATTGTTGG 945988 37 100.0 33 ..................................... GTTTTTTCATGGATGTAGTGGTTACCGTCATAG 946058 37 100.0 35 ..................................... GCTTTCTTTGTTTATACATTTCGTCATACCGCGGG 946130 37 100.0 34 ..................................... TTTTAGGCAAAATCCATTTGCCAGAAATTTTTTA 946201 37 100.0 36 ..................................... GTCTATCTGCATATCTGGTATAGCATAAGTTGCTTC 946274 37 100.0 34 ..................................... AAAAGAAAAATTAATCTATTACGCTAAATTCGTA 946345 37 100.0 33 ..................................... CCTCGATCGAAGAAGCATGTTTTTTTGCTTCTT 946415 37 100.0 33 ..................................... ACACTACAAAGATGTTCAAAGGCATTGTCAATC 946485 37 100.0 35 ..................................... AGAAAGATAAGCGAGATTTTAAGATAAAGGTTTCT 946557 37 100.0 33 ..................................... CATTGACTAGCGCGGTCATTTCCGCTGTTGTTA 946627 37 100.0 33 ..................................... ACATCGAAATGATCAAACTCATAAGTACCATCC 946697 37 100.0 33 ..................................... TATTCTTTTAAGCCAGGTTTCGGCCTCGTCCTG 946767 37 100.0 34 ..................................... TTAAAGTTATTGATTGTTTCAAGTTTTTCAAAAA 946838 37 94.6 0 ..................................A.T | ========== ====== ====== ====== ===================================== ==================================== ================== 51 37 99.9 34 ATTTAAATACCAGACCTTATAAAGAAGGGATTAAGAC # Left flank : CGCTTTTTCGTTAACGGCGGCTGGCTGGAACAACATGTTTACGGACTTTGCCTTAATCTGAAACTTGCCCATGGCATTCAGGACATCGGCAGAAGCATCCAGGTGGAGCGGCTGCAAAACGATCCGGTAAAAAACGAGCTCGACGTAGCCTTCCTCAAGGAAAACCGTCTTTATCTGATCGAATGTAAAACCAAAGTATTCAGCGGCAACGATCCCGCGCATGGCGACGGTGCGCAAACGCTGTACAAACTGGACACGCTAAAAGACCTGGGCGGTTTGCAAGCCCGAACAATGCTGGTAAGCTTTACCCGCCCAAGACCGCACGACCTGCAACGCGCCGGCGACCTCGGCATTAGGGTCTGCTGTCATCGGGATTTGCATCACCTGAAAGATCATTTACAGGCATGGATCAAATGAAACCGGTTAACTTTGAAAAAGCGCAAAAACTCCTCAACCCCATCCGTAATCCATTGAATAAAAAAGGAGAATGCCGCCGAGCC # Right flank : TTCATAAGAAGCCTTGAATTGATTTCATCAGCAGCAAGGACGCCGCTCCTCACATCGATCAGTCACGCATCCCGACAAGCTTGTCAAACGCCCCACTCTCCGCTTGTTGCCTTATGCTGACCGCATGAGTCAGAGACAACTTTACATCGCCGCGTACGACATCCGGGACAGCAAGCGATTGCGCAATGCCTTGAAGGTCGTGCGCGCTTATGCGTCCGGCGGGCAAAAATCGGTTTATGAATGTTTTTTGACTCCGAACGAGAAATCGGCATTGCTGCTGGAAGTCGATCAGGTGATTGATTCCGCCGAAGACCGTTTCTTTCTGCTGAAGCTGGAGGCCCGAGGCCGGGTCTATACGCTGGGCAAAGCGGTGCCGCCTCAGGACGGCGCTTTTTATTACATAGGGTGAACGATGAGTACGTTATATCTCGACCGCAAGAACCTCGCCATCAAGCTGGACGGCGAAGCCATGGCCTTATATGAAAACGGCGAGCGGCGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACCAGACCTTATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2791313-2788038 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB889965.1 Methylosarcina fibrata AML-C10 A3OWDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2791312 32 100.0 33 ................................ TAAGAAAGTGAACCGACTAAGCGGAACTTAGAA 2791247 32 100.0 34 ................................ AGTCACACTCCACCCGCACTCGACGCACTTCATA 2791181 32 100.0 34 ................................ GCCAGATGCCGGAGAAAGTTTGTAAAATGTGCAG 2791115 32 100.0 34 ................................ AAACGAAGCACAGGGCGGCGGGTCTGGGTTGAAT 2791049 32 100.0 32 ................................ CGCTCGCTGAGCGCTTGCATAGAGAGCACCCG 2790985 32 100.0 32 ................................ GCGTTATGCGTCATTCTGTTTCAACCACGCAT 2790921 32 100.0 32 ................................ GGTGATTCTTGCCATGTTGTAAACTCCTTATA 2790857 32 100.0 33 ................................ ATTGTCGAGGTTACTTATGACAATTGAACAAAA 2790792 32 100.0 32 ................................ CCGAGATAAGCGAGACAAACGAGGCGGGAACG 2790728 32 100.0 32 ................................ CGGTTATACCGAATTGGACGACGGGGGGCATC 2790664 32 100.0 33 ................................ GATGACGCAAACCCCAGGATTGAATCGAATGGC 2790599 32 100.0 33 ................................ AACGGCACCGACGGCGGCACTCGGGCACGAATC 2790534 32 100.0 32 ................................ GCCGCGCTTGAGCGACTGAACGAAGAAGATAT 2790470 32 100.0 33 ................................ CGTCGGCATTGTCGAGTGAATACGGGTAGATCG 2790405 32 100.0 32 ................................ CGACCCCTGGTCGCCGTCGATCGACGGCATTC 2790341 32 100.0 32 ................................ GCTGCCAGCCACGAGCGCGGTCCGGCGCGCAC 2790277 32 100.0 34 ................................ ATCGTTACGCTTATTACGCCAGCGTCGAGAAAAA 2790211 32 100.0 33 ................................ CGATTCGGTTTGGTCGCGCAACAGAGTGGCAAA 2790146 32 100.0 33 ................................ TTGTAGAAAAAATACAACGCATCGAGATCGGAA 2790081 32 100.0 33 ................................ TTGTAGAAAAAATACAACGCATCGAGATCGGAA 2790016 32 100.0 33 ................................ GAGGAACTTATGGCCATCAAACAACCCGTTTCA 2789951 32 100.0 32 ................................ ATGAGAACTGGCCATTGAACCCAGTCCTTTTT 2789887 32 100.0 32 ................................ TGAAAATCGTCGGCCATATCATCTAAAGCTTC 2789823 32 100.0 32 ................................ CATTTTTGCGTCAGCTCAACCGAGGCTTGCGA 2789759 32 100.0 32 ................................ CAGAAACGGGACATTGCCGGTTAAATCCTTGG 2789695 32 100.0 32 ................................ GCCAGGCATGCCGAACGCCAAAGCGAATACAG 2789631 32 100.0 33 ................................ CAGATACACCTGTGGATGTAGTCCAAGTCAAAT 2789566 32 100.0 32 ................................ CATCGGCTAGGTTGCTATCAATCTGTTAGGAG 2789502 32 100.0 35 ................................ TTCGACGGTATTGATGGGCTTGAGGGTGTTGTTTT 2789435 32 100.0 32 ................................ GGCAACCTGGTCCAGGCGCAGAAAAAATCCGG 2789371 32 100.0 33 ................................ CATCGCGACGTAGGGCTTGCCGTCGATGACGGC 2789306 32 100.0 32 ................................ TAATCGGCGGGTCATACCGATCTTGAACACAT 2789242 32 100.0 32 ................................ TGAAATCCAGACAGATCGGCGCGACCTATTAC 2789178 32 100.0 33 ................................ TTGCAACTCAACGAAATGATAGGAGGGCGGCCC 2789113 32 100.0 34 ................................ TGAGTAATCCGCCGGCGTCGGCCGGCATCGCCAG 2789047 32 100.0 32 ................................ AAGCCCCTATGCGACAAGATCGCCCAGGCGCA 2788983 32 100.0 33 ................................ GAGATTGAACAAGCGGAAAAGGAACAACGCATC 2788918 32 100.0 34 ................................ TGGTATTCGACCAGTCCCATTAAGTCGTCGTCGA 2788852 32 100.0 33 ................................ GACCGAGCGGAAAAAGTTACGCGCCGCCAAATG 2788787 32 100.0 33 ................................ GTAGGATTCGGCTACAGCGTTGTAATTCCCCCA 2788722 32 100.0 33 ................................ CCCGGTTGACTCTGCTACGGGCGGATTATCGAC 2788657 32 100.0 34 ................................ TCGTCGATCGCGCCGCGCTGGCCGGTGTGTTCAA 2788591 32 100.0 32 ................................ ACTCCGTTTGTGAACGTCCGCCCACGAAAATA 2788527 32 100.0 34 ................................ GATTTCATCGACGAAGTCGCCTAACCCGGAGAAG 2788461 32 100.0 32 ................................ GCTGCCAAGAGCCAGGTCTCTATCATAAACAA 2788397 32 100.0 34 ................................ CCGAGAAAAGAGAGGCGGGAACGGATAAAAAGAT 2788331 32 100.0 34 ................................ TTTCGGCATGTACCAATTGTGGCAAATGACTCGC 2788265 32 100.0 33 ................................ ATACAAACGTTGAAACAAATCAAAGGCTTGAAC 2788200 32 100.0 33 ................................ ATACAAACGTTGAAACAAATCAAAGGCTTGAAC 2788135 32 100.0 34 ................................ AGTTTGGGTCCGGTAATAAAACCCCGGACGGAAC 2788069 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 51 32 100.0 33 GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Left flank : CCGTTTTTGTGGAAATAAACCGGAGAAATCATGATGATGATTTTAGTGACGTATGATGTCAGTTTCAAAAATGAAACCGGCCCCAAGCGGCTGCGAAGAATGGCCAAGCTATGCCAGGTCTTCGGACAACGCGTGCAATATTCGGTGTTTGAAGTCGAAGTCGACATGGCTCAGTGGACCCAGTTGAAAAATGATTTGATCAAGGTCATGGATGAAAACGAAGACAGTTTACGCATTTATTATCTGGGCAATAACTGGGAACGGCGCGTCGAGCATATCGGCGCCAAAAAAGCGTTGGATTTAAACGGGCTGCTACTGCTTTAATGCGAACCTGTAGCTGCCATAAAAAGTCCCGCGCTTTCGCATAACCTCCAATAAATTGATTTAAAATATTTTTTGATCAAGTCTTTTTTATCCTACAATGATTTTCGCAATTGTCTTGATTGATTCGCAATTCAAACGCTATTTACTTTTAGAATTCAATCAATTGAGTAAATGCA # Right flank : CGTTTGCCGCCACTGCGGGACATACAGGATTACGTCGCGCCTCGCCGAACAATAAAAAACCCGCCAAGCCAGAAGACTTGCGGGTTTATGAATCTGTTTGAACCTTGTTGAATGCCCAATTGAGAGAGTCAGGCAAACAATAGTCTGTAATCCATGTATATCAATAGTTAAATAAATTGTATTTGTAAATATACCCCCAAAAATACCCCCAATAGTGCAAGGCTGCCCCTTTTATCAATAAAACTTTGACAGTCTCAGTTCGGCCATACTGGGCAGTTGAGGCGTATTTTCGAATGACTGGTTTAGATTAAAAATTGCCCATTCATAACGCCTAGCTCACCGGAAAAATGCGAGCGCAGCGAGTATTTTGTCCGGTGAGCTATATTTGTTAGGCATATGCTATATGGCCCTTAATCTTCTCCAGCAGGTACTCAGAAGATAAATTTTCACCTTCTATTGCAAGCTTCTCGACACATGATGGCTCCAAGGCAATAGTGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3508121-3509166 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB889965.1 Methylosarcina fibrata AML-C10 A3OWDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3508121 36 100.0 36 .................................... CCCTTCGCTGTAGGCTGCAATAGCCGGGTCTCGATC 3508193 36 100.0 35 .................................... GTAAAACCAAAGAAGAAAGCTATCCCGCCCAATCT 3508264 36 100.0 40 .................................... TGATCGGCGTCCGCAGCGCCGACCGGCAGGCCGATTCATT 3508340 36 100.0 35 .................................... GAAGATATAAGCGCCGACAAGGTAGGCCAGTGTGA 3508411 36 100.0 35 .................................... GAAGATATAAGCGCCGACAAGGTAGGCCAGTGTGA 3508482 36 100.0 38 .................................... AGCTTCACGAACTGCACCAATAGCGAAACCGAGAGACC 3508556 36 100.0 36 .................................... CGTTCGAGAAAATCGAAGAGAACCGGGAGCTGAACG 3508628 36 100.0 35 .................................... TCCTACGGGGCGTAAGAAAAAATGAATCAATAAAA 3508699 36 100.0 37 .................................... ATCCTGGGCAAGCGAAGGAGAATAAGCCATGTTCACC 3508772 36 100.0 35 .................................... TTGCCGGACCCGTTTTTGCCTCTCTCCAATCCAGC 3508843 36 100.0 38 .................................... AGCTTCACGAACTGCACCAATAGCGAAACCGAGAGACC 3508917 36 100.0 35 .................................... CCAGCGCCGGGGCGGCTAAGGCTGTTATGTGGGCC 3508988 36 100.0 36 .................................... AATCCGTCCAGCGGCGTGTACGACTTTTCGGCGATC 3509060 36 100.0 35 .................................... GCAAAGCCGCCCGCGCTATCTCGTCCTCGCGCAGC 3509131 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 GCTTCAATGAGGCTCCGGCAGGAAGCCGGAGATAAC # Left flank : ACTACGACTCGGCCCTGCAAGCCGCAATTACCTGCTTTATGCGTTTCGGAGATAACCCATGAGACAGGATTGCATTCAAGCGGTCTCGATAGCGCTGGGCCGAGCGCTGAAAGTCGGCGAAGCGCAAAAGATCGAGCAGCGCATCCGCGAACAAAAGATTTTACTCGCGAACAAGGACAGGCAGAAATATCTGCAAATGACCGAAGCGCAGCGGCTCCAGGAAGCGGCCAAGGGGGCGGCGGAAGCCTTGAAAGCCGAAGCCGCGAAGAAACAGCAGCGGATTGCGTTGACCGTATTGGCCAATCAGAAGCTCACCCATTATCTTGAGAATCAGCCGGGTCTGATGATTGACAGCGTGGACCGGATTCTCGCGCCGAAATTCGACGGGCAGGATAATACCCAATCGGCGGAATCGAAGTTCAAGGCGATTTACAACGAGTACACCCGCGAACTGTCCCGCCATATTGAATCGTTCGGGCCGATATCCCTGCAACAAGTGA # Right flank : CAGCCGTCTCTGGAGCCCTTAAAACGCAAGGGTTTGGACAGGCAAACGCGAGCGCTCCCTGTGTCGCCCGCAAGGCATTATACAAAGCTTCGACCAAATCTCCATGCCTATTTATTAATAACCTGATTTTTAAAGAACATTTTTCCACGAGCGCTGAGCTTGTTTTTTGCGTCACCTCAGCGCTCGCCATGCGGCGGCGGCCTGACCCTGTCATACGATGACCGGCTGTTTCTCGATGACATCGAAGTCCTTCCCCAGACTCACGACTTGAGGCTTCACCGATTCCGCCGGGCCGACGTTAATGATCAGAACATGATCCTCGCTATGATGAATCATGCCGTCGAGCAGCGCAATCAATTCGGCGTGGCGCTTGCGGCTCAGGCGGCATTGAAACACCGACAACTGCAACCAGTCGCCGTAACCTTTCATCAGTCGGAAAACGCGCCGCCAGCGCTTGGGGTCGCGGATATCGTAAGTGACCAGATACAAATAATCGTAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCTCCGGCAGGAAGCCGGAGATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.80,-13.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //