Array 1 28098-27887 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGJ01000032.1 Levilactobacillus brevis strain SF9B SF9B_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28097 29 100.0 32 ............................. AACACCGTCAACCAGATTGATACCCGAATTGA 28036 29 100.0 32 ............................. GATGGTGATACCCTTAGCAGTGTTGTGGTTAA 27975 29 100.0 32 ............................. TGACGTAGCCCAACGACTGCTTGATTTTAAGC 27914 28 79.3 0 ....A.................C-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACCACCACAACTTGCTAGGTAATCAGACCCAAAAAACCACCGCACAATCATCAGCCATTTGGCCGAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGATAACCGCCAGCCCGTACATCATGGCGCCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCCACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGGGAGAAGAACGCGCCAAAGATGAAGAGTACCCCAGTGACGAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21061-20788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGJ01000029.1 Levilactobacillus brevis strain SF9B SF9B_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21060 29 100.0 32 ............................. GGACAGTACCAAGGTATTCCACAAACAACTGT 20999 29 100.0 32 ............................. CTGCTGTAGCCTTATAGCCCAACAGATTTTTC 20938 29 100.0 32 ............................. AGATGGCCTTTTTCGGCTTAGCTGCCTTAGTG 20877 29 96.6 32 .............G............... GCTTATTGTGTAGCCCTCTTTTTTGCAACCGT 20816 29 82.8 0 ............T....A......G..TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCACACATGTGGGGGTGATCCT # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATTGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATCCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGAATCAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATACCGGTTTGGCGGTGTTTCTTTAGT # Right flank : AATACTGGGGATGGCTCTAACACCGGGGGCAACACTGATACCGGTAATGGTTCAAATACCACTGGTGATGACAACAGTTCAAGCATCTCAGTATCAATCAGTTCAAACGATTCTGACGAACAGATCAAGCAAGCTGTCGCAAGTCTTAAAAAGATTGCCGCTCGTTACAGCATTAGCACTACCGCTTTAGATAACGTGGTTGCTAAGGCATCAGATCCAATGTCAGCAACTGACAAGGCAGAAATTGTTGCTGCGTTCAGTAACGTGGTTTCAAAGATTAAAGATATTCAGAACTCAGATCAAAACACTGTTGATCAGAATACTGGTGACAATGCTTCAGATCCTAATCACGCCAATACTGGCTACACAACTAATTTGAGTGGAACGGCAGCAGCCAATAAGCGGCTTTCCGAGAATAAGCTAGTCCCAGTTAAGCCAGATTACGACACTACGCCAATTAACCCACACGATAAGAAGTATCTGATTGATACAACTGCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28426-28029 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGJ01000036.1 Levilactobacillus brevis strain SF9B SF9B_contig_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28425 29 100.0 32 ............................. CCCTTCTTTATCCACTATCGCAGTCGCTTAAA 28364 29 100.0 32 ............................. CACCCGCGGGTCAATTATTCCGTTGATGTAAC 28303 29 96.6 33 ............................T TGTTGACCATTTGCTGATGTGATTTGTCGGCTG 28241 29 96.6 32 ............................T CAGGTTAACCACTGAGAATACATCTGAGTTCT 28180 29 100.0 32 ............................. GTATCAAATGGATGGCTTAGCTTTCTTCTTTG 28119 29 100.0 33 ............................. CAATCAAAAATGGCCGTCAATCCGTCTGTATCC 28057 29 82.8 0 .............A....A......A.GG | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.6 32 GTATTCCCCACATGTGTGGGGGTGATCCC # Left flank : TGATTTTAATGTGATGGGAGCGGCCTTTTGCCAGGCCCATCCGGAGCAGGTCACCCAACAGCCGCTGGGTCAGCACCATCAGGCTAGGGCAATAGGGATGCGGGCGCTGGTCGACTTTGCGCGAGAGTATTATCGAGAAAAAGATCGGCGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAGCCGTGGTGAAAGGAGTAGCGGCTACGTTTTATTGTATTATATAGGCTTCTATGCCTTTGATAGTATCAAAAGGTAGTCACGATACTTTGGAACAGGCTAGTGATTCGGCAGTCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCAGTTGGATAGATGATTGTTAATCAAATATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAACGAAAATGCTGGTATATCAAGGATTCTTTAGT # Right flank : AGGCGTTTCAAAAATGATTGTAATGCTGTGCTTAAATCAAAATAGACTTTTTATGGAAAGATAGTTGATAGAGCAGACCACCCAAGTACTAGCAGGCCATTGTGATAGGATGCAGGTGTTGATTGATTTTGCATGAGGACATTATCGAAAAAAGGATCGGCGTGAGATGAACTTATCGAGGAGTCTATCGGGTATTCAGGCACGGGGATCGTATGTATAAATGAGGCTAACTGTCAAGAAATAAAGTGCTGGTGGTTGACAAAGTTAATGGCGCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTTTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTAAAACAAGTTTATTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //