Array 1 1249211-1248168 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024086.1 Desulfomarina profundi strain KT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1249210 37 100.0 34 ..................................... CCGAATTTCAATTCGACCACCAGAATGTTCAACC 1249139 37 100.0 33 ..................................... CGCAATAATTTCACGGAATAAATAAGGGTCTCT 1249069 37 100.0 36 ..................................... GCATTCCTGTTTGCCGTATACAACCAGTTGGGTTTT 1248996 37 100.0 35 ..................................... ACTCATATTTGGATCTATACACTCTGCCACTACCT 1248924 37 100.0 35 ..................................... ATAACCGACGTATGCCGGTTGACCTCAGCTCATTA 1248852 37 100.0 35 ..................................... ATCCACAGCCAAGAGGGGTTGATTCACAACAAAAA 1248780 37 100.0 36 ..................................... TGACCACATTGCGCTCAATGACTGGATATTATTAAA 1248707 37 100.0 37 ..................................... AAAGAACAACTCTCCTCAAGCTGCAAGAACAGTGCTT 1248633 37 100.0 36 ..................................... ACCTATTTTGTAATCTCCATTCTTTATGATAAGAGT 1248560 37 100.0 35 ..................................... CATTGTAGTTTTTCCTGATCCGGCAGGGCCGGTAA 1248488 37 100.0 37 ..................................... CTCCTATAATGAAGGTACCAAGAGCATCTCCGTAGTT 1248414 37 100.0 32 ..................................... AAAGAATTGTGCTGGAGTCCAAAGCTTTTCTT 1248345 37 100.0 33 ..................................... GGTCCAGTCTTTGCGACAAATCCAACATATTCG 1248275 37 100.0 34 ..................................... ATGCATCTGTTAAACCATTCCTAACTCTTTCAGT 1248204 37 89.2 0 .................................CTTT | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 99.3 35 GTTGCAGAGTATCCTCGCTAAGGAAGAGGATTGAGAC # Left flank : TTTCACGGCTCGAGGTTCTGATTCTGGCGAAAAAGGATGATATCAGAGCTTACCCCATCACCAGACCTGGCGATGTCTGGAGCTGCGGCACCGGGAGATCGTCCGAAGCCCTGATCCTGCCGGGTAAAGGCCGGAAAGGACATAAAAAGGTTGGCGGAAAACCTCAGGCAGCCAGTAAAAACTGGAAAGAGAAAGTTCTTGCCTGGTTTACTTTTAAAAAATAAACGTTCTCCTGTAAGGTGAAAACCAGTCAACCCCATGATTTTACAAATGATCAGGTTATTTTTTCAGCCCTTATGAACGTATACACATAACTTGCCCTTTATTTTACATCGAAAACTCTTTAACATATTGTAATTTCACTTTTATTTATAACGTTCCGATTTAGCGGAATTTCAAATAAAGTGTTCGTTTATCTGGTTAAAAAATTGCTGAAAAATAGTGTCAAAAAGAACACAGTATATTATACTGATTTTGCAACGGAATTGGAACCGGCTGCA # Right flank : TATTCATTCCAGTGAATCTTTCCACCCATATCATTTTCCCTCTTGACGGACGACCATCGTCGCTCTATCCTTAGTCAGGCAATAAGAATGCAGCTGCAACCTTGAATGCTGGGCAGGGAAGGAGAAACGGCTATGGGAGAGATTGTGGTACTCCTTGATCATCGGGATATCGTGGTGAAGAGTGAGGGGCAAGTACTGAGAATTGATCGTCCCGGCCGTAAACCGGAGCGGGTACCGATCAATATGGTAGGCCGGGTGGTAGTATATGGCAGCCCTATGGTCTCCTGTGATGTCTGGCGCAAACTGGCAGACTGCGGTGTTCCCGCCATCCTTTTCCCTGGCAGAGGCAAGGGTGGCCCCGCCTGGCTCGGCAGCGGTCTCTCCACCTCTGTTATGGTTCGTCTGGCCCAGCACAAGGGTGCTGCTTCCCCAACTGTTTCCACTGAAATTGCCCGTTTTCTCATTGACAGAAAACTGGCTGTGCAGGAAAAGCTTCTGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGTATCCTCGCTAAGGAAGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1260454-1260206 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024086.1 Desulfomarina profundi strain KT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1260453 37 100.0 32 ..................................... CAGAGCAGCGTGATGTCGCCGCCCTGGTCAAG 1260384 37 100.0 35 ..................................... GGAGATCTCCAGCCGGTCGGTGGATTTTTTGTTGA 1260312 37 100.0 33 ..................................... TTTTTAAAATTTCTCCTAATCACTTCTTTTTGT 1260242 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 100.0 34 GTTGCAGAGTATCCTCGCTAAGGAAGAGGATTGAGAC # Left flank : GACCATTACAGATCATATTTTAGCCACAACACCACAACGAATGATCTGTCTGCACCTGTTGCCATAGAAGGATGTCGGGTTCCGTCTCGTTGACTCTCTGGAAGAATTGTAACAGCGTCTCCATTTCGACGATGCATGATGAAGAATTATTTTTCCCTCAATTCTCTATATATAGAGTAAATTTTTCCTACAAAAGCCGCAAATCGGTCGGAAAAGATAACGTCTTTAAAAAAACCGCTGGGAACACAGTATAACCCATTGAGAATACTATTTATTCGGTTATTTTTTTCGCACTTATAGACTTATGCACACAACAGGCACGGTTTTTCCCTGATACACATATGTAATATACTGTTATCATAGAACTTGTCAGTTTATTCCGCAAAACAGGATTTTCCAAAAAACCGTTCATTTATCTGGTTAATTTTTTCCAGAAAAATAGTGTCAAAAATAAAACAGTATATTATACTGATTTCGCAACGAAATTGGAACCGGGTGCA # Right flank : ACACCGAAATCAGCTGTTCCTCTAATTTTTTTCTGCAGTTGCAGAGTATCCTTGAAATTACTACCTTTTCCGCATTGTCGCTGGTCCCCCCCCTATCAGAACCAACATAAGACAGGTCGGTAACAATTCTTAACAATGGTGGAGCTTCTCTGGTAAAAGTTTTCAATTTTCTAATGCATTAATTTGATAATTCAGCCATAATGCTAAGAATTACAAAAAATATCCAACGCAATGGAACTTTTACATGAACCATATTTCCTACCACACTGTTTCAGTAATCTGTCCTGAAAATGATCTTGAAAGCCATACAATACTCAAGCTTGCAGAGGAATTAGGACTCGACGTGAGGAAATCCCATCAACCATGGGGGGCAAGACTGGAAACAGAACCGGAAGAAACATTCCAGGATCTGAAAACAACCGTCATAATTGTTGAAATCCCAGGACCGGAAAAAGAGGAGCAGTTACGCCGTGAAGGCCATACAATCATTATTGTTGATC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGTATCCTCGCTAAGGAAGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1263768-1262802 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024086.1 Desulfomarina profundi strain KT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1263767 37 100.0 34 ..................................... GTACAGTTGTCTACCTCTATCTGCACTCCGTTAT 1263696 37 100.0 36 ..................................... GAGTTTGTGTAAGCCGTACTGTTAATTGTTATTGAT 1263623 37 100.0 36 ..................................... CAATGTTAGCCGCCACATCACCCCTAATCTGAGTGT 1263550 37 100.0 36 ..................................... CACACCTAACCTGATTATATATCGTTCCAGCGCTGG 1263477 37 100.0 34 ..................................... ATTGTCTTTAATGATGTCAACCATCTTTTCTTCC 1263406 37 100.0 36 ..................................... AGCTATGCACACGCCTCCTTCGCAGTTTTTGATTTG 1263333 37 100.0 35 ..................................... CGACTGACCAGTTGCCAATTAGTGGCACTGCCGGA 1263261 37 100.0 32 ..................................... CCTGAAGTGGCTGCATATTCAGACGGTATTTT 1263192 37 100.0 36 ..................................... AGTTTGCTCATTACATTTCCTAATTTGTTAAATGCT 1263119 37 100.0 34 ..................................... ATTCTATTAACAGGAGATAATCTTTTTTCTTTAT 1263048 37 100.0 31 ..................................... GTATGCGTAGTATGACTAGGCTCTGTTTTAC 1262980 37 97.3 33 ................A.................... CCATGAGCTACAGCAACACTACCTTTATAGCCC 1262910 37 100.0 35 ..................................... TCTTCAAGGTCAGTTGTTTCCGTATCCATTACAAA 1262838 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 99.8 35 GTTGCAGAGTATCCTCGCTAAAGAAGAGGATTGAGAC # Left flank : CATGGATACAGGAAATGGAGCCGCCTTTGTTTACAGAAACAATAAGGTTGGCAGGATAATCCCTCTGCCGATTGTCGGCCACTGGTTGAAAAAAGGATGGGGCTGGTATTGCCGAAATTCCAAACTGGGGAAAATACCGCGTATCCCCGGTATGTAATTCCTTCCGGACTTTGCCGGCGGGTGATTTATTGTGGCTGTGTTTCACAGGTAACCAGAAAATAGAAAGCCATAAAACCGTCGCCAATATAGCGTAACCAATTGATAATACGATTTATCAGGTTATTTTTTCCACACTTATGAACTTATACACACAATAGGCACGGTTTTTCACTGATATAAATATGTAATATCCTGTTATCATGCAATATTTCAGATTATTTCGCAAAACAGGATTTTTAAAAAAACCGTTCATTTATCTGGTTAATTTTTTCCAGAAAATTAGTGTCAAAAAGAACACAGTATATTATACTGATTTTACAGGTGAATTGGAACCCGGTGCA # Right flank : TGGTCTTGAAAAAATGGTGAGAATCCTCTGCTTATGGCAATGCACAGGATTGCATAGAGTTATTCAGTCACTGACCGCTGACTGACAGTTAGGTATTTTGATGTTTTTGAGTTGTATCTCAGGAAGATCAGTGGAAAGTTTCTGACAGGAGTTTATAGAATTTCACCGCTCATTGGCTGCGGTGGGAGAATACGGACTGCCGGTCAACGAAGAATTGCCCAGTCACCGACCAATCCGGCTCAAAGAAACGATGTAATCTCTTTGATTGTTGCCTTCGCCACCCCTGCGCGACCTGCAAATTCAGGCCATCCGGCAACAGCCTCTGCCACTTCCCTGAAAATGGCAGATGATCGCCTGGGGGCGATACCTGATTGTTCTGCCAGTTGCAGCATCCGATCTTTTTCCGGTCGCAGCCCTTCACCAAGAACCGTGGTTGTATGTTCTCCTCCCGGCCCCCTGGCAAAGGTCAGGTCATAGGCCGGCGCAAACGACCATTCACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGTATCCTCGCTAAAGAAGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 2977536-2976902 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024086.1 Desulfomarina profundi strain KT2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2977535 32 100.0 36 ................................ CCTCCCAAAAATCTATTAGTTTTGTTATCGCTCTCC 2977467 32 100.0 34 ................................ TTTTATTGGCTCAGGCCCAGGTCTCCGGGCATTT 2977401 32 100.0 34 ................................ AGCGTACCAGATCAAGTTTTAAAAGACAGGGCCA 2977335 32 100.0 36 ................................ TGAATCAAGTGGGAAGACCATCCAGTTTGAGCTGAC 2977267 32 100.0 35 ................................ CGGTACAGCTTGCAGCCACCCGGAAAAACGAACAT 2977200 32 100.0 35 ................................ CACTTTGTCGCATTTTCAAGCGCAGCTCCAAGTAA 2977133 32 100.0 34 ................................ AACCCATGTTTCAACAAATATGCGCATTTGGTAT 2977067 32 100.0 37 ................................ AGTCGCACCTGGTATACATCCGTCACACCAGGTATAC 2976998 32 100.0 33 ................................ CGACCGGACCTGACCTCTGTTTGCCAATGATCA 2976933 32 96.9 0 .............................G.. | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.7 35 GTCGCCCCCTGCACGGGGGCGTGGATTGAAAC # Left flank : GTTGGTGAGCTATGATGTATCCACTACTGATAAGGCAGGCCGGCGGCGTTTACGCAGGGTAGCCAAGGTTTGCAAGAATTATGGTCAGCGGGTGCAGTTTTCTGTGTTTGAGTGTTTGGTTGATCCAGCACAATGGACCGTGATGCGTCAGCAGTTGGTTGATGAAATTGATCCGGAGACCGACAGCCTGCGTTTTTATTATCTTGGTTCCAACTGGAAGCGGCGGGTAGAGCATGTGGGTGCCAAACCGGGAGTGGATCAGGAGGGATTATTGCTGGTATAACATTATATAAGGAGGGAATTATCTGAAAAAGTTTATGACACTGCGAACCCTTAGTGGACATGGTTTCCCGTAGAGGTTCGCATTTTGATTATCTTTCTGTATTTGCGATATTTTTATTTTTAAGCAGATGTGTTAAGAGAAGTGTTGCTGTGCAGTTTGAGAGGTTCGCAAAATATATGCTTTTCCTCTAAGTCAGCTTTGCTATAAAAAGCTGACA # Right flank : AAGAAAAAGACATCTGTTGACTTATTCTGGCCCCTGAACTATTTTTTCCCGAAATGACTCGGTTCCTGTCCTGACCTTCCGGGAGGTGTTGATGGACAGGTTGCCGTGGCTGGTGGAGCCCGGAAAATCCATGGCAGTCGGGTGGGTCATTTGAGGCAGGGGGTTTTGTTTTTCTCCTGCCTTTTTTCTGCTGTCATGTTTTCTCCTCCTGGTGTTCATGATATTCCATACCACCGTGCCGTTATAGAGCAATTCGACGATTACGATCAATCCTTCTTTTCTTTTTCCCCGGAAAAAACCGATAAATTTCTGGCGGTATTTTGTTTGTCCTGTCGGGGTGATATATTCTGTGAGTATGATCTGATACGGATCTTCAATTGTTTTGCGCAGGTGGCGGATAAACTCCAACTCCAGGAAAATTCCATAAAAATGAGTGACAAATTTGCTTTGTAATTATTTTTTAATATATAGTTAATTATCGAGCATAAACAAATGCGACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTGCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //