Array 1 2023234-2024050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049258.1 Nordella sp. HKS 07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2023234 28 96.4 33 .....................A...... CGACCTCGAGCTGTTCGAAGTGGAGCGCCACGC 2023295 28 96.4 33 ...............A............ GGAGCAGGATGTGGTGGTGCGCGAGGGGCTGCT 2023356 28 100.0 33 ............................ GTCGCCCGATCTCGACAGCCGCATTGCCGACGT 2023417 28 96.4 33 ...........................T CCGCTATCGTCGATTTTTCGAAGAGCACGATTA 2023478 28 96.4 33 ..........G................. GTATCCTCACATCACCGAGAAGGACACCGGCCA 2023539 28 96.4 33 ..............G............. CTATTGGCATGCACTGCCGATGTACGCCCAGGC 2023600 28 100.0 33 ............................ CGGCGACGACGGGGTGCGGACCTATGACGGCTC 2023661 28 96.4 33 ...............A............ GGAAACCGCCTACCAGACGGCGAAGACCGGCGA 2023722 28 100.0 33 ............................ CATGGTGCCCATCGGCGGCGAGCGCATGAACAC 2023783 28 100.0 33 ............................ ATACATGGGCGCCGACGTTGTCTATGACGGTGG 2023844 28 100.0 33 ............................ AACATGGAACGGCATCAATGTGGTCTGCATCTC 2023905 27 89.3 33 ..C....-.....G.............. GTGGGTGCTCTGCCAGATAGGTTATTGTGAAAC 2023965 26 82.1 33 ..C..........--...TA........ GAGCGGGCAAACAGCCGCGCTGACTTAACGATG 2024024 27 71.4 0 ..C.....AA.-.G...A.A.......A | ========== ====== ====== ====== ============================ ================================= ================== 14 28 94.4 33 GTTTCTTCCCCGTACGCGGGGGTGGACC # Left flank : GGGTGAAGCTCTCAGCGTCGAGATGCCTCCGCTCAAAGACGGCGATGCATTCCGTTTCAACGTTCGTTTGATCCCAACTGTGCGTATCACGCCGACTGGCAAGCGACGACACGGCGAGCGCGATGCCTTTCTTGTCGCGGCGGAAGCGACCGGACCCGATGGTGGCTTGGCTCGCGGTCTAGTCTACGAGCGGTACCTGAAGAGCAAGTTGGGCGGAGCTGACGTTACATCGTGCCGACTTGACGGCTTTCGGTTGGTACGGTTCACACGCCCAAAGAAGGACGGCCGAGCCCAAATAACCATGCCCGAAGCCATCCTCACTGGAACGCTGAAAGTAACCGACGCCACCACTTGTACCAGCTGCATCCGAGCGGGCATTGGGCGGCAGCGGGTCTATGGCTACGGCATGGTTCGCCTGCAACCGGTCAAGTTGGGCGGTTAGTCGGTACCGTGATGCTATCCTCGCTAAATCATTTGATTGCAGATAGTTACGTACAAGG # Right flank : AATTGTCTCCTGCTCGTCGCTGTCACCTAAGGAATGCATCAGCTGATTGAACCGTGGGCCAAGATCAATCCGCAAGGCGAAACCCGTTCCGTCTTTGAACACTCCTTGGACGTGGCTCTCACCATCCATGCTATCCTTGACCGTGAAATCGAGCGCCGACGCCTGTCGTCAGCTTTCAACGTCAAACTGACTGATGTGCACTTGGCGCGGCTTGCGGTCCTCGGTGGCCTGCACGACTTTGGCAAATGCCTGAAAGGTTTTCAGGACAAGCTCGGCTCCCTATCCGCGTTAGGACCTGGCCATGTAGCCGAAGCACTGGCAGTCCTCGTATCAGTGCGTGAAACGCGAGATGCGGTTGGGACAGCCCTGCTTCGCGAGTGGTTCGGGGAGCCCACCAATCCAATCTATGTATCAGTCTGTCATCACGGCGAACCGGTAGGCGAGGACCGCTTCCGTCGACACCTCGCCATCGTCCGCGAACTTCTCCAGACCACACGCTA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCCCGTACGCGGGGGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.40,-9.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 4653969-4656848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049258.1 Nordella sp. HKS 07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4653969 29 72.4 29 ...C.TT..A.......T..A.A...T.. GTGTTCCAAGTGAAGGTCCTGCCGCGCTT 4654027 29 86.2 32 ......TA.A.G................. TCGTTGATCTCGGCCCGAGCCTCCATGACCAT C [4654030] 4654089 29 89.7 32 ...........T..T..........G... ATGCTCAAATCCTTCAATGTCCGCGAGCTGGC 4654150 29 96.6 32 ......T...................... CGCTCCCACTTCTTCGTTACGCTGTTGACGCC 4654211 29 96.6 32 .......T..................... AGCCGGAAGCAGTACTCGGTAACTCGCAAATA 4654272 29 100.0 32 ............................. GCATCGCTCATACCGTCGTTGTCGCTGTCCGT 4654333 29 93.1 32 .....T...........T........... TGCTCGATGTCGGTCTGCATCGAATAACGCTC 4654394 29 93.1 32 .........T..A................ ACAGTCCGGTGGGCTTGCTGCCCGGCTGGAAG 4654455 29 100.0 32 ............................. TCTTCGAGGTCCGTCATACGCTGCTCGTAGGC 4654516 28 96.6 32 .................-........... GTCAATCGCGCGCCGATCGACAGCGTTCAGAC 4654576 29 96.6 32 ..............T.............. TCATCGCCGAGATCATTTTCATGGAGGCGAGC 4654637 29 89.7 32 ....A.T............A......... TACGCACAGCACAACGCCACCGATGCCTGGTG 4654698 29 96.6 32 ......T...................... GTTCACCATAGTCATTTCGTTTTCGAGGATCA 4654759 29 75.9 32 .T....T.....TG.AG........C... CGAAGCATGGCGATGTAATCCTCTGTGCCAAG 4654820 29 96.6 19 .........A................... GCCCGCTCTGACGATCGTC Deletion [4654868] 4654868 29 86.2 32 ..T...T.....TG............... CCTGTTGGGCCGAGGCCGTTTCATAAAATGAT 4654929 29 89.7 32 ......T......G....A.......... TCGTCACAGGCCAGCGCCGCACGTGGGATCCC 4654990 29 86.2 32 A.....T............A...A..... GAGGTGCGCAGGATCAAGTCCTTCACAGGGAG 4655051 29 89.7 32 ......T...T.......A.......... AAAAAGCGGCAAGCGTCGTCTTACGCCTAAGC 4655112 29 89.7 32 .....T.....G...........A..... GAACGCATCCTTGGGATTGTGGGCCTTGCCAT 4655173 29 100.0 32 ............................. ATGTCCCCCGCTCCTCGCCTCCACGAGAACGA 4655234 29 96.6 32 ..............T.............. GTCATGGGCGATTCCATGGACCTGGAACACTT 4655295 29 96.6 32 ............................T GACAATCCATGTCTATAGTGACGTTGAAATTT 4655356 29 89.7 33 A.........T.........A........ AGGTTTGCTCCTTGCCCAGGAACAATTGCCTGC 4655418 29 96.6 32 ....A........................ CGGTAGGATCGACACCATATTTACGCTCAGGA 4655479 29 93.1 32 ......T......G............... GCGAGGAAGACGTAGACCCGATCCTCCTCCCA 4655540 29 100.0 32 ............................. AGCCGGTAATGGTCTTTGACACCAGATCGGGG 4655601 29 100.0 32 ............................. GCAGAACAGCCTAAGCGCTCATGGAGTGATAT 4655662 28 96.6 32 .................-........... ACCCAATGCGAGGGCTAGCTTTGGATCGCTGA 4655722 29 89.7 32 ........T..........T......T.. ACGCTGGATAGTGGCCTGGACAGGCTGGGTAA 4655783 29 89.7 32 ......T......T.T............. CCGAGCTTGCCCAGCTCGTTTTCATCGTTGAT 4655844 29 93.1 32 ............T......A......... ACCTCGATCGGCGTCGGCGCAAAGCTCTCTGG 4655905 29 100.0 32 ............................. GTTCTACCTGTCATCCGCCTTGCATCCTAAAA 4655966 29 100.0 32 ............................. GTGCAACGGCAATTCGTCGAATACCTGCGCCA 4656027 29 93.1 32 ........G.................T.. GTGAAGCGCTTGTGCAGCCCAGCCAGGTCTTC 4656088 29 93.1 32 .T...............A........... ATGTCGGCGATGCGCTGCACCTGAGCGAACTT 4656149 29 93.1 32 ......T.................C.... TACTTGACCAAGAGCAGTGAAGCGAGGGTTCG 4656210 29 100.0 32 ............................. TACCGGTTGGACGCCGCCGCCTGCCTCTCTGC 4656271 29 100.0 32 ............................. GCTGGACGGCGGTTCGTCCGCGCGATCAAGAG 4656332 29 96.6 32 ............................A ATTTTCGACATCTTCACGGGCCAGGAAATAAA 4656393 29 86.2 32 ......T...T...G....A......... GAAACCGCTTACCAGACCGCGAAGACCGGCGA 4656454 29 100.0 32 ............................. ATATCGGGAATATCTTCGCTTGTTGCTTTCTG 4656515 29 86.2 32 .....T.....G.G.........C..... TTCAGCGGCCGGCCTGAAGTCTCGCGATGAAG 4656576 29 100.0 32 ............................. AAGCACAACCCCGCGCGGCCGCATGACCGTTA 4656637 29 100.0 32 ............................. CGTAGACAGGTATTTGCGAGTTACCGAGTACG 4656698 29 96.6 32 ..A.......................... ATGAAGGTGCACGACAAGGAATACGTGGCAAT 4656759 29 100.0 32 ............................. ACCTGCCATGACACGGTGAAGCAGAAGGAAGA 4656820 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 93.8 32 GCGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGCGAACCCTACCGTGAGCCAAAGCCGGCCCCGAGAAGATGGCCGCAAGCCACGCGGGCGGCGCCACGACGTCGTCATGGCCGAGCTGTCGAAAATTCTACCGGGGTCGCGGGCCGAGGCTCGCCGCTCAATCATTGAAAGTGCGGGACGGGGATGGCTGGAACGCCAGGGGGCCGCCTCGGGTTTTGTCCTGGATTCGGCCGCGTTGACGATTGACGGCTATGACCAGAAGGTCATCACGTCCCCTGCGGGCAAGAGCCGCAAAGGTCAGATCCGCATTTCACTACTGTCCTTTGAAGGCCAGTTGCGCGTGGTCGATCCCGCGGCTTTCCTCGACAGGCTGGCGAAAGGCTTCGGCCGCGCGCGCGCCTTCGGCTGCGGCCTGATGCTGATCCGTAGGGCGTGAGGCGTCCTGTCACTTGATTGTCCCTTCCGGAACGAACTGCGGAACTTTCGGTACGCTCTTTGACTAGTAAATAGATCAATTGATTCTAGTAAGA # Right flank : GGCGGAGGATGAAACCCTTGCCAACCGAGCTTTGCGTTCCCCGCACTGACTAGATTGTCGCCTACGGAACCAACACCCTCATCCGCGCTTCGCGCACCTTCTCCCGCAAGCGGTAGAAGGGGAGGTGAGGCGACTGGAGCAGCTCCCATGCGCCTAAGCCGGCATCGCCTGCGGCTTGCGCATCTCGAACCAGATATGGCCGGCGACGGCGGTGAGCACGATGAGGCCGCCGGCGAGTGTGTAAACACTCGGCACCTCGCCGAAGGCGAGCCACACCCATAAAGGGGCGAGGGGGACATCGAGCGCGGTGAGAAGTGTCGCCTCAGCGGCCGGGATCATGCGCGAGCCGAGGCTGAACAGCAAGAGGCCGAGGGCGCTCTGCGTCACGCCGAACAGCGCCAGCATGATGAGATCGAAAGAGGAGACGTCGAGAGGATCGCAGAACCAGAAGGCGACGAAGGCTGCGGTCCAGGAGGACAGCCCGAGCACCGGCAGGATCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [40-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4945454-4946338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049258.1 Nordella sp. HKS 07 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4945454 28 100.0 38 ............................ ACCACTCCCGCCACATCCGCAGGGGCGGGGCATACAGA G [4945469] 4945521 28 89.3 38 ....A....A.....A............ GTGACGCGGCTCAGATCCATCAGCGCCCATGGTACAGC 4945587 28 96.4 36 ..........C................. CCCTCAATGGAGAGAGAGAATGAGCGAGCGTTGCAG 4945651 28 100.0 39 ............................ GTGACGAACGTCCGCAACACCAAGTCAATCCGTTACAGC A [4945655] 4945719 28 100.0 39 ............................ TGCGTCAACCGCACGTCGCGGCCGAATATCGTTGCAGCC 4945786 28 92.9 37 TT.......................... CCGGCGAACGGCACAACCGTCGAACCGTGGGTTGCAG 4945851 28 100.0 37 ............................ CCGGCGAACGGCACAACCGTCGAACCGTGGGTTGCAG 4945916 28 100.0 38 ............................ GGGAGAACGGCAGAGAGGCAGGCGCGGGCGGTTGTAGA 4945982 28 100.0 38 ............................ CTCAAACACGATCAAGGAGACGTGAGATGAGTTGCAGA 4946048 28 92.9 38 .............C......G....... TCGGGGAACGTATTGTTCGCCTTGATCACAGTTGCAGG 4946114 28 89.3 38 ......A......T.......T...... GGAATGAGGTTGGCGAATAGCTGGGCCCCGGTTGCAGA 4946180 28 96.4 37 .................A.......... TAATCGTACCAGCCGATGAGTTCATCGTTGGGTATGG 4946245 28 92.9 38 ..........A..T.............. TCCCCGCAATCTCAAGGAGAATAGAGCATTGGAGCAAA 4946311 28 96.4 0 ..T......................... | ========== ====== ====== ====== ============================ ======================================= ================== 14 28 96.2 38 CCCCCTCGATTTGAAGGGGGACTGAAAG # Left flank : ACTGAAAGATGATGCGGAGGTCCTCGCGGAGAAAGCGGGAGGTGCAGTGAACCTTCAGCAGATCACGACGCGGTATGAAGCAATAGCTTCGGGTGGAGAACTGGAGCACGGATGGGCACTCAGGGATGTATCGGTGGACGAGGCGGCAGTATTCCTGTTGGCCTGGCGTGCGTGGGTTGCGAATGGCTCACGAGTCGGCGCCATTCAGCGCAGCGGCTTCGGGAAATTGAAGGGCCACTACGATATCCTGATCAAGCCGTCACAGGGTGCGAATCGGCTGGATGCACCGGTCGCCGCCGGACGCATGAAGTTTTCATACGAGGCAGGTGTACAAATCGAGACGGGCGATGACGTATTGCAGAAGATCGTCGGTGCGGAGGACGCGATGAGAAAGGAAGGATTCGCGAATTGGAACCTGAAAGCTTCATAGGCAATTTTGCTGCGGACGATGAGTGTTTGTATCGGAAAGCCCGTAACAAATGCGATATCAGGGGTTCAGC # Right flank : GTAGAGGATGGCGAGGAAGCGGAGTTCCTTGAGCCAGTAAATTCGGTTAGACACGTGCGATGACTTCGACGTCTCGCATCCTTTCGCGTATTCTCACACCGCGCGACCAACAGAAGCGGCTAGCCGAGTTCATTGACGGCGCGGCTTCACCTGCCATCGCAGTTCAGGCCGATACGGGCACGGGGAAGACTGCCGTCCTGCTGTCGGCAGCAATCGCGGAAGCAAAGCGCGGTCGCCGGGCAATCGTCAGTACTCATACCATCCAGCTGCTCCACCAGGTCGAACGCGAGGCGGCCCGGTTTAGTACGGAAGGCGTCAGTTTTGGAACGCGATTGGGAATGCGCAACTTCATCTCTGTGTCACGGGCGAACTCGGCTTTTGCCCGTCTGCTGTCCAGAGATGACGCGACCGCAGAAGATGAAGCCGTCTTCTCCGATCTGATGAACTTCGCCGAGAGTCGTTCAGGCCTGATCGAGGACTTCGTTGCCGAGTGCGGGGAT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCTCGATTTGAAGGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //