Array 1 748230-748603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSH020000001.1 Endosymbiont of Lamellibrachia barhami isolate D756_A12_LB11 HiC_scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 748230 25 100.0 48 ......................... TGTGGAACCGGTCGAACGAATCCCGAGATATCGTTTGTCTTAATCCCC 748303 25 100.0 46 ......................... TTTTGGCCAGCCAGATTTACGGTGCAGTTTGCACGTCTTAATCCCC 748374 25 100.0 42 ......................... ACACTAGCCTGCCAGTTGGGACTCCGTTTCTGTCTTAACTCC 748441 25 84.0 38 .C.................C.TG.. CGGCAAAGCGTACGGTCATTGCCGGTTGAGTCTTAACT AAA [748460] 748507 24 92.0 44 .C............-.......... AATTGACCAAGCACGCAGAACGCTTTACAGAAAAGTCTTAATCC T [748516] 748576 25 88.0 0 C...............A.C...... | GT,C [748583,748600] ========== ====== ====== ====== ========================= ================================================ ================== 6 25 94.0 44 TTTTTATCGGGTCTCTGTTTTCAAC # Left flank : GATATTTGTTACCTCAACGGCAGAAGTGCTGTTGCCATGCGCTAGTAAGCTCATTGTAATGACCCTCAATAAGTGATTCGATTTCTTTCAACTCTTTTCTTGAATAATGATAATTTTTTGCAAGCTCAATTTCCGGCTCTAACCAGAACTTTGCCTCACCATTACCAGATAATACGTGAATGTGCATTCGCTCTTCTTCACGTGAGAAGAAGAAAAACCTATATCCAGATTCTCTAAATACTGTTGGACTCACTCCCCCTCCTTCACATAACGTCTACTATTGATGTGGTTGCTATGTAATATAACAGTAAACTCACTCTTCTTTTGCTTTCAGTGATAAATCTGGATAACCATCTAACTCAGAGTATTCTTCTTAAAAACAATAGGGGACGCAATAGGGGACGCACCACGTTTCCCCGTTTTCCGGGCCATTTCTGGTACTTGATGATCAGGTGTAGTATGACCTGATCACAAAAAACGTGGTGCGTCCCCTATTGATT # Right flank : CAACTATCAGGACTGTTGTTTCGTGAGGAATCAGGTCTTAATCCTTTTATTGGAGCAATACGTAACTAATCGAAGTGGCTACCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCGAAACGGCTGCACTGAAGGTTGAAGCAGCTGGGCTACAAGCCACCGTTTAAGTTTATCCGGATGCCAGTTGGCGTAATGCAGTCGTAGTCCCAGCCAGCTTTGCCATGCCAAACCGCTGGTTTCCATGAGGAGTTGAAGCCAGGATATGGCTAGCAATTGCGACAACAGGTATTTCCGTCTCAGTTATCTGAGATAATTGTTTACAGGAGCCGTATACGTATCCGTACG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTATCGGGTCTCTGTTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 948415-950028 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSH020000001.1 Endosymbiont of Lamellibrachia barhami isolate D756_A12_LB11 HiC_scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 948415 28 100.0 33 ............................ CCGATGATGAATATGGATCAGAGCGGGCAAGAA 948476 28 100.0 33 ............................ CACTGTGTTTCTGATTTTCAGCGCTCCAATATC 948537 28 100.0 33 ............................ CATCAGGGCGTTGATATTGCCGAGCTTTTTGAT 948598 28 100.0 33 ............................ TCTTGATGAGTCGCTCTGGAAACACCTGCGGAA 948659 28 100.0 33 ............................ ATCTCCCCGGCCTTGATCTCTTCCGGTCGCCTG 948720 28 100.0 33 ............................ TTCTGCATGCTCTTCTCATCGTCATTGGTCACT 948781 28 100.0 33 ............................ CGGTAACCGCAGCCACCAGTCTGCGACTGTTCG 948842 28 100.0 33 ............................ TGACCCGCCGCCTGACGCCTGGGTGCAGCAGAT 948903 28 100.0 33 ............................ CCAGATCAAGTCACTCCCCCCTCTCCAGCAGCA 948964 28 100.0 33 ............................ TTATGCCAATGAGGATGGTTTCTGCTATCCCAG 949025 28 100.0 33 ............................ TATTGCAAATACTGCTGCGGCCTATCTCTCTGT 949086 28 100.0 33 ............................ CAGCTAGTCATGGTTTTAAACTCCTGTGCTATC 949147 28 100.0 33 ............................ CCTGATGAGCTATACCGATCCAGATACCGGTCT 949208 28 100.0 33 ............................ TGTGGGTAGTGCCTGGCGCTCGAAACTCGGACC 949269 28 100.0 33 ............................ TCAATAGAGTCCTTTGCTTTAGTAACAGGATTT 949330 28 100.0 33 ............................ CAAGGAACCTGCCCAACTCACTGAGCATTGTTT 949391 28 100.0 33 ............................ TTAGGGGTTTTCCCCTTGAACCAAACCCGCTGC 949452 28 100.0 33 ............................ TGATTCCGGATCGTCTTTGTCGAGATCTGCAAT 949513 28 100.0 33 ............................ CTGAGAGGCGAAGGTGATGCCGGACTTATGACC 949574 28 100.0 33 ............................ TATCCCCACTCATTGCCTACTCCATGCTGTAGA 949635 28 100.0 33 ............................ CGTATGAGGGGCAGAGGTGCCGTCCGCATTCTG 949696 28 100.0 33 ............................ CCGGAAAGAAGGGCTTGATGAATATCTTGTCCC 949757 28 100.0 33 ............................ GCCCAGCTGCGTGGCCTTCATCACCGCCAGAGT 949818 28 100.0 33 ............................ CAAGAAAATCAATCGGAGCGGCTAGACTCCGCA 949879 28 100.0 33 ............................ CTGAGTGTTAGATGGGATCGTCAGTCTTGGCTT 949940 28 89.3 33 ............C..........GA... GTTCTGTTGCCCTCTTCTATCCGTGTTGGTCGC 950001 28 67.9 0 .TG.T.......C.T..A.....GA.T. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.4 33 GCCTCCCCCGCATCCGCGGGGATCGACC # Left flank : TTTACATCGTCTGGTTTATCAATGTCTTTTATTATATCCGCTTGATATTTCAGTGACCGATCAATGAACATTCTTATATCAACATCTAAGTCTTTGTAGAATAATCCTGGTAATTTTTTATCTAAATCACCTAGAGTTTTTGGTAGCGGGTATTGGTTGTTAAAAAATTCTTGAACCGTTGTAATGCGTTGTTGTCCGTCAATAATTTCATTTACTGTTTGAGTCTCTGAAAGCCGAACCTCACGTATTACAAGTTTAGGTATATAGTAGCGGCGAAAAAGACTATCCATAAGGGATTGTTTTTTCTTTTTTGACCACACTGATTTTCGTTGATATGGAGGTCTAGTTACATACATTTCCTTGTATTCAAAGAAATCTTTGATGTTGATGTCTGAGGGAACCGTTATATATTCTGGTTTTGGATTAAATGACATTTTTAACGAAACTCCTTTGTATTATTTTCTTCACATAACAGAGAGATAGGCCGCAGCAGTAATTGC # Right flank : CGTGTGACTTCTAGGAAAAAAACTCCCAACCACATAGATCATCGCTAATGAGGCAATAGCCATGAACAATCCGGTAGTGCCAAAGACAAATATCAGCGGCCTGTGAGGCGGATGGTGAGATTGCCAATGCCACCGGAACCGGGCGTGGTGGCTCTGTGCCTCAGAGCCTTGTTGGTTGAGAAGTTGCGGCAAACAGATTTGCCTCAGGCCCATGAAAATGATTAAAGTGTTGCATTCAGCGCATGGTGAACACTGAGGTAATACGTAGGATTTGGTGACGACTGCAGGGATGCAGGAGGTAGAGTAATGCAGGAGCAATTACCGAGTAAAACGAACCGCATCATTCGCGACAGATGCGCATCGCTACGCTCAGCACATCCTACGATTCCGTGTTTCCCGCACTTATATGGGGCAGCTGTATGGTTGCAAAGTGTTAAATCCAGGTCGGATAGGAGTTCGTATCCGGCACAATTCCATTGTTTTTATTTCTTCCAGTTACC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCCCCCGCATCCGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1400318-1401199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVSH020000001.1 Endosymbiont of Lamellibrachia barhami isolate D756_A12_LB11 HiC_scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1400318 28 100.0 33 ............................ TCCACTGACACTCCCCGTGATCCTGCAAAAACC 1400379 28 100.0 33 ............................ CTCAACACCTCAGGCAAGATGCTCGCCAACTAC 1400440 28 100.0 33 ............................ AACTGACCACCCTGCAGCACAAATACCGCGTAC 1400501 28 100.0 33 ............................ CACTCTCTGATCTAGTTCCTTTTGTTTCTGTCG 1400562 28 100.0 33 ............................ CTGGCGCCTTGCCAGACTCCATTTCCCACATCA 1400623 28 100.0 33 ............................ CTTCAGCTCATTTGCTTCCTGCACCCAAAGTTC 1400684 28 100.0 33 ............................ CTTAACTGGATACGGATCGACAAGAACTAGGTG 1400745 28 100.0 33 ............................ TGCAGTATTTGAGATCGAGTCCAGGCCTCAAAC 1400806 28 100.0 33 ............................ TGCCATACTCTCTTCCAAGCTCATGCCGCTACC 1400867 28 100.0 33 ............................ TCAAGTCGCGGGCGGTTGAGTCATGAACGAACT 1400928 28 100.0 33 ............................ CCTTGCTAAGTGATTGGGAGAAGTGCGGTCTTT 1400989 28 100.0 33 ............................ TGAACCTCTCTGACTATATAGATGCGTATTTTG 1401050 28 96.4 33 .....................G...... TTGAGTGTTCGGGGGAATTGTCAACCTTGGCTT 1401111 28 100.0 33 ............................ CTTTTGCGCGGACCGTTTATGTCCATTCCCGAT 1401172 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 33 GCCTCCCCCGCATCCGCGGGGATCGACC # Left flank : TCACCCTGCCAATGGCCTTCACAGTCGCCAAAAAGGCCATTGACAACCCAGAGCTACCTCTGGAACGCACCCTACGCCGAGAAGCCGCACTGCAATTCCGCAAACAAAAGCTGATCGCCAAAATGATCGACCGGATCAAGGAACTGCTACATGCCGATGACCGTGATAGTGACACGTAATGTCTCCGGCCGGATGCGTGGATTCCTGGCCTCCTCCATGCTGGAAATGGCCCCGGGCGTCTACAGCGCCCCCAAGATGTCACCCGCTGTACGCGAACGTGTCTGGAATGTCCTCACAGAATGGTTTACTGCCGAACAGGGGGCATCAGTAACCCTCCTCTGGGCCGACAAAAATCAACCAGGAGGCCAAAACGCCAGAACACTGGGACTCCCCCCCACCAAACTGGTTGATCTGGACGGGTTACTCGTTACCCACCGACCCACCATATAATTTCCACGCTCTTTAACAATTTGTTACTATTCATGCTGTTAGATGCTAGA # Right flank : CTATAACGTCGCAAATAACTGGGCGTTAAAAGTGTTGCGCGTTTTTTGCGCGACGCTTTTAACGCTCCATGTTGATTTGCCTTGTTAGGCGAATTACCAGAACCATATAGAGTTGTCATTCTTTGTACCACCGCGTATCTCTGATTTAACACTAAAGTCATATTCACCTTTTTTGTATTTTTCCAAGGCATCGGTTAGCTTGATAACACCAGCAGAACCAATATTTATCATTAGAACACTGCCATCAATGTTCACAGATATTCCAATATGATCCCTATTGTAATTGAGTTTAACTTTTGAGTAATACTCGTAGCGCCTGTTATAACCATTAACTGATGCGACTTTATCTGTTGTTTTAGTTAGGTTTATTGTCCTTTTCCCTTCATCATGAATTTTCAGGATACTGAACAGTTGTAAGATATTGTCCGTAGATAGTTTGTCGCTACTTAGATGTAAGCCACCATAGCTTCGTTTTGAGTTATTAGCATAATGCCAAATAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCCCCCGCATCCGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //