Array 1 190299-192251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYJ010000011.1 Pseudomonas aeruginosa strain PA13-36 NODE_11_length_222929_cov_66.851745, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 190299 30 100.0 36 .............................. GCCAGGCGCTCGCTGGCCCTCTTCCGCTCATGCTGT 190365 30 100.0 38 .............................. GCTTCGCTGAGTGATCTTTTCGCCGTGAGCCCGGAGGT 190433 30 100.0 37 .............................. ACGAGCCGCTGTAGCACGCTTTCTTGAAAGCCTTCGT 190500 30 100.0 37 .............................. TTCAGCAGAAGCGGAGCATCCATCAGTACACCCTCGT 190567 30 100.0 38 .............................. CTGGAGCAAGCCAGGCTCACCGCTCTCTATAGAGATGT 190635 30 100.0 37 .............................. ATGGCCAGGTGCGCGCGCTGCGGCTCCGTGGGATCGT 190702 30 100.0 36 .............................. ATCGCGGTCACGCGGCCGACGATCGTCGTCCCGTGT 190768 30 100.0 36 .............................. TCGTGCTCGGGCTTGAACGACTTGTAGACGTAGCGT 190834 30 100.0 36 .............................. AGATCGAGGAGCTTGACGTGAGCGAAGTCACCAAGT 190900 30 100.0 36 .............................. TCTACAATCACGCAGGCGCCGGCATCGAAGCGCAGT 190966 30 100.0 35 .............................. TAACCCTCCCTTCACTGGCTGCGCATGCGCGGCGT 191031 30 100.0 36 .............................. ACCATCGCCTCTTGGCCAAGCCCTGCAGAAACCAGT 191097 30 100.0 36 .............................. ACCATTACCGGCGCCGACACGGATGCCACAGGGCGT 191163 30 100.0 37 .............................. ATTGCCGGCTCCGGCATGTGCCAGAACTGTGACGCGT 191230 30 100.0 36 .............................. TGCGGCGTGTACATGTGTCCGTACAAAGTCCTAGGT 191296 30 100.0 37 .............................. TCGTGCCCCCATGCCGGTCTGCATGGTGTCAACCAGT 191363 30 100.0 36 .............................. ACTTTAACGCCTGCGTGTCCAAGGCGATCCCGGCGT 191429 30 100.0 37 .............................. AGTCGTCCATGCTCCGCCCTGGCGGGTTGGAAGCAGT 191496 30 100.0 37 .............................. ATTGCGTGCGCCGGCTGCAACCGGTGAACGCAGGGGT 191563 30 100.0 36 .............................. AACCTGCCAGACCTCGATGCCGTTATCCAGGGATGT 191629 30 100.0 36 .............................. AGCAGTTGATCAGTTCCGGCGCAGTAGCGGCGACGT 191695 30 100.0 35 .............................. TGCGGGATCGCCCAGGCAGTAACGCACTTCATGGT 191760 30 100.0 37 .............................. GCCCAGCTCACCGACAGCACCCCGTAGACCTTGGCGT 191827 30 100.0 36 .............................. ACCACCAGGGTCTCGCGCGGCAGGCCGAGCACAGGT 191893 30 100.0 35 .............................. GGCTCCGGTCAGAAGATGTAGGTTTGTTGGCTTGT 191958 30 100.0 36 .............................. GCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGT 192024 30 96.7 35 ............C................. AGCTCGCTGACGTCGAGGATGCGGCGGTGGAAGGT 192089 30 100.0 36 .............................. AGCTCGGGCATGCCCTGGACACCATCGATCCATGGT 192155 30 96.7 37 ...............T.............. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 192222 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.2 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTTATTGATTTATATACTCTTTCTTTGAAGCTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : GATAGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGTCGAAAGAAAGACTAGGTTGCGCTGCTCGTCACACATGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAACGTAGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCTGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGTTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGTCGGCGATGCCGTTGTTGGAAAGTTGGTCCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 552840-553405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYJ010000001.1 Pseudomonas aeruginosa strain PA13-36 NODE_1_length_1228951_cov_52.916879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 552840 28 100.0 32 ............................ GTGCTGTGGGGTATGGACAAGTCTGGCGGCAA 552900 28 100.0 32 ............................ TCAGCCGAGAGCCTGCTGGCCCTGATCAAGGA 552960 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 553020 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 553080 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 553140 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 553200 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 553260 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 553319 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 553378 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 562622-561934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBYJ010000001.1 Pseudomonas aeruginosa strain PA13-36 NODE_1_length_1228951_cov_52.916879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 562621 28 100.0 32 ............................ ACCGACGTATGCCAGCGGCAACAGCACGCGAG 562561 28 100.0 32 ............................ TGGGCGTGCTGATTGTTGTGGCGGCAAGTATT 562501 28 100.0 32 ............................ CGGATCAGGCATCACGCACGTCGTGCCGGACC 562441 28 100.0 32 ............................ TTGTCGCTGACGTCACCCAGCATCACCAGGGC 562381 28 100.0 32 ............................ AGAATGGCCTCCAGCCCCAGCGAATGGCCTGG 562321 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 562261 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 562201 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 562141 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 562081 28 100.0 32 ............................ CAAGGTCGTCACCAGTACTTCTTGGGGCGGGC 562021 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 561961 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //