Array 1 260009-258273 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWOO02000004.1 Actinomadura madurae LIID-AJ290 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 260008 30 96.7 31 .............................G AGGCCCTGCTCGGCCCGGTCCGGGGCATCCA 259947 30 100.0 31 .............................. CGACCCCGTCCCTACCGTGCGGGCTCGTGGA 259886 30 96.7 31 .............................A CCCCGTCGTCGAACCCGTAGTCCGGGTCGTC 259825 30 96.7 31 .............................T TAGGAGGGTGCATTGATGACCGGTGACCCCG 259764 30 100.0 31 .............................. CGGGACACATCGAGGTCGTGCCGAAGCGGCA 259703 30 96.7 31 .............................G GTGACCGGGGTCGACACTGACTTTTTCTTGG 259642 30 96.7 31 .............................A CCGAGCTGGGTGAGGAGGCCGGGCTCGCGGA 259581 30 96.7 31 .............................G GGGCCAGGCTGAACCCGAAGACCAAGAAGAC 259520 30 100.0 31 .............................. GAGACGGGTCCGCCTTCAGGGTGACTGGGTC 259459 30 100.0 31 .............................. CTCGGGTACCTGGCGGTGCGGCGTGACCGTG 259398 30 96.7 31 .............................A GTGGGAAGCGATCAAGGTCCGGGCCGGTTCC 259337 30 93.3 31 ...................A.........G ATTCTGTGTCCCTCGTCCTCGATCTTCTTGA 259276 30 100.0 31 .............................. AGTCGGCGTGCTTGGCCAGGGCCGGGGAGGA 259215 30 100.0 31 .............................. AGTCCAAAGCCTTACCGAACACCGAACGCCA 259154 30 96.7 31 .............................G CGGCGACCGCCGCCAGCACCGTGGCCGCCGC 259093 30 96.7 31 .............................A CGTTCGTGGACGTGGCCGGGTGGCGGATCGT 259032 30 96.7 31 .............................T GATCGCGTCCCGCAGGTACTGGTTCAGCTTC 258971 30 96.7 31 .............................T GGCACGGGCCCAGCTCGGGGATATAGCCGGG 258910 30 96.7 31 .............................T GGTATGCGGCAGGGGACGTGTTTCTGGAGTC 258849 30 96.7 31 .............................G TGGCCTTCCGCGACCGCGAGCAGCAGGTCGG 258788 30 93.3 31 ........................A....A CGTCGGCCAGGGACCCGGCGAGGTCGAGGTC 258727 30 93.3 31 ................T............T CCGGCCCGTGGTGACGCGCGCCGCGCAGGCC 258666 30 96.7 31 .............................T CCGTGTCGTTCACGGTGGAGGTGTTGGACCC 258605 30 96.7 31 .............................G GATCATCGTCAGCACCCGCACCCGCCCGGAA 258544 30 93.3 31 ...................A.........G ATGGGCAGAGCCGCCCGTCGGGTGGCACGGC 258483 30 93.3 31 ...................A........T. CTCCCTGGTAGAGGCCCTGCAGAGGATTTCC 258422 30 100.0 31 .............................. GTACCGGCCTATCGGCCGAGACCCGCGCTGT 258361 30 90.0 29 .........A..................GG TGAGGTCGGAGGATGTGCTGGTCTGCGGT 258302 30 83.3 0 .......T..........C......C.T.G | ========== ====== ====== ====== ============================== =============================== ================== 29 30 96.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATGCCGGTAGCCGTTGCGCTGGCTGCTCCGGCCAGGAGTGGGCCGTCCCCACTCCGCGCCAACGACGGCGTCAGCATCAGCCGACAGCAGCGCGTTGATGACCGACTGCAGCAGCGAGCGCATCAGATCCGGGCTTGCCTCGGCGAGCGCTTCGCCGAGCAGGCCAGCAGGGTCGACAATGTGGGGAGCGGTCATCGTGATGGTCCTCGAGGATTCTGTGGAAGGTTGACTCGAAGGATCACGCGGTGGCCGCGTCCTCGTCCGACACACACGCCGGCGACGATCTCGGCGACCGCGCTACACCACTATCGGGGACTCAACTCGTCCGCATCACTCCAGCTTCGCCGCATAGCTGGTTAGTTGCCTCTCCTCAACATGGCCAGGCAGCCTAGGAGGTCAGCGATAAACGCCGCGCCTCTCCCTTGGAGTCCAGGATGTCCGATTCTACGAAAGTGCTCGAAAACCACACCGCCCGACGATAAACGCCCAGGTGGAGCAGG # Right flank : GTGCAGAGGGCACCGTGAGAGCTTGGACGGTCTCCGGAAGTGCGGCGGTGGTGGTGAGGGCCGGGAGCGCGGCGTACGGGAGGTGGCGCCGCGCCCCCGGGGGCTTAGGGCTCGGTTATGGCCGGGGTTGCTCTGCCTCCTCAGGGCGGGGATGTCGTGTGGGGTGTTTCGTGGTGCCTGATGATGCGTTCGGCGGCTTCTTGGAGGTCGAGCAGCGGCTGCCGGACGTAGCCTTGGCCGTCCCGCCAGGAGAAGACCTTGGGCTCGACCCAGACGTTGAGGGCTCCGGTGTTGAGGATGGAGATACCGCTGTCGTCGCTGCGGCAGGTGGTGGGAACCCCTCGGGCTCTGAGCGCTGCAGATAGTCGGCTTGCCGCGGAAAGCGGGGCAACCACGCGGTCGATCGCCGGCCATGGGGTGGGGAGAGGGAGCGCGAACCAGACGCACTTGCCGGTCGCTGCGGTCAACCGGGACCGAGTGAAATGGCTGCCGGTGTCGGC # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //