Array 1 422519-424499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEG010000001.1 Salmonella enterica isolate 3978_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422519 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422580 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422641 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422702 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422763 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422824 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422885 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422946 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423007 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423068 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423129 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423190 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423251 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423312 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423373 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423434 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423495 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423556 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423617 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423678 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423739 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423800 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423861 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423922 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423984 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424045 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424106 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424167 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424228 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424289 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424350 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424411 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424472 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440632-441802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEG010000001.1 Salmonella enterica isolate 3978_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440632 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440693 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440754 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440815 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440876 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440937 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440998 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441059 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441121 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441224 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441285 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441346 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441407 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441468 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441529 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441590 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441651 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441712 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441773 29 96.6 0 A............................ | A [441799] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //