Array 1 703048-704998 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJE01000005.1 Yersinia pseudotuberculosis strain NCTC1101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 703048 28 100.0 32 ............................ TAATGTTATTCAGGTCGGCGATTGAATCCGTA 703108 28 100.0 32 ............................ GTCACTGAAACGCAGATACGCGCTGAGTTTGC 703168 28 100.0 32 ............................ GCTTATCCCTGCCATTCGTCCCGGCGTGATTG 703228 28 100.0 32 ............................ TTGTCAAGGTTCGCCACGGTATAGCAGCACCA 703288 28 100.0 32 ............................ ATGAGATGCCGTCATAATCAATGCCAATACCA 703348 28 100.0 32 ............................ ACGCCTTGCGAAATGCCGAGTCTTTAATACCT 703408 28 100.0 32 ............................ ATACAGCGCATGATGGTTGGAAGCTAACCCCC 703468 28 96.4 32 A........................... ATCTGCAAACACGCCGTAATTCTCACCGCGAG 703528 28 100.0 32 ............................ CCTCAATTCGATCTCTTCACTCGCAAGCACCG 703588 28 100.0 32 ............................ GTAAAACTCTCTATAACTGTCTGGCTTTTTGA 703648 28 100.0 32 ............................ AACACGTGGGATTTTGGATACATGCGAGTGAC 703708 28 100.0 32 ............................ GAAAGGCTTAAGCAACGGATACTCATAGAATA 703768 28 100.0 32 ............................ AACTACCAGGCTGTGATTTTTGCCAAGGAGGG 703828 28 100.0 32 ............................ TTTGTATAAAAATTCGGTTTTAGTGTGACCAA 703888 28 100.0 32 ............................ TTGATGGATATGCCGCACATAACGCCACTGAC 703948 28 100.0 33 ............................ ATCTCGTCATCGACTACCCCCCATTCCAATACA 704009 28 100.0 32 ............................ TTGATTCGAATACCGGCAGTGCGCACAACGGC 704069 28 100.0 32 ............................ GCAAAATATAATAATCAGGCTCGGCCCTCTTT 704129 28 100.0 32 ............................ GCACGTGGTTTGAAAGTGTGCTGCAAAAGGTC 704189 28 100.0 32 ............................ TTGGATGAAGGCTATTTCAGAGTTGCTTCAAG 704249 28 100.0 33 ............................ CGGACATGTTAAAGGTAACTATCAGCCCTAACC 704310 28 100.0 32 ............................ TCCTGCTTTACCAGATTGGGCCATGCCTCCAA 704370 28 100.0 32 ............................ AATGATGTACGGCGCGGCGGATGAATCTGCAA 704430 28 100.0 32 ............................ GCAATGGCTATTTAATCCTGTCTGTTCCGGTT 704490 28 100.0 32 ............................ ATTGATGATATTCCAACGCTGAAAAAGGCCAA 704550 28 100.0 32 ............................ GGGTAAGAACGGAGCAACATAAACCCGGCGAC 704610 28 100.0 33 ............................ TCATCGATGATCAACAGGTCAGGGCCGGTATAA 704671 28 100.0 32 ............................ TCTCTTAAACTAGTAGCCATAAACACTTTATC 704731 28 100.0 32 ............................ GAGTGGGGCCACGTTTGACAGCATCATGGAAT 704791 28 100.0 32 ............................ GAGTGTTAATGTGACGCCCAGCAATGCGACGC 704851 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 704911 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 704971 27 85.7 0 ...................-A.A.C... | T [704995] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 279254-280181 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHJE01000002.1 Yersinia pseudotuberculosis strain NCTC1101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 279254 28 100.0 32 ............................ TGTCAGGAGTCACAGGTCAATGCTGGTACGGA 279314 28 100.0 32 ............................ TTGTCATCGTAGTCGGGCTTACCATTAAGCAC 279374 28 100.0 32 ............................ TGCAACTTCTTTCTCGGGCTTATCAATAAAAC 279434 28 100.0 32 ............................ AATTAATAGTATACTTTAGTAAGTCGTCAACA 279494 28 100.0 32 ............................ TGCGTAGAAACCCATGGCGTACTTCTGCTTCG 279554 28 100.0 32 ............................ AAAGTTTACTGAGTTATAACCCGACGGTAGGT 279614 28 100.0 32 ............................ AAGAGGATTGTGGAGGCTGTAATGATCGATGC 279674 28 100.0 32 ............................ TTATTAGGGTTCATATTTCCGACATCCATTAA 279734 28 100.0 32 ............................ CGAAACGGATTCCATCCGGTAGGTTCCCCACT 279794 28 100.0 32 ............................ TCTAATGGTTCTTGATTCTCTAAATCGGGGCG 279854 28 100.0 32 ............................ ATTAGAAGTACCCGCATATTATCGCTGGCTGA 279914 28 100.0 32 ............................ TGCTCAAACGTACATGACAGTTCAAATACTGG 279974 28 100.0 32 ............................ GTTAAATTCGGCATTATCGAATCACCACCAAA 280034 28 100.0 32 ............................ GTCTTCATCAACGTGATAAATCACTTCAGCCT 280094 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 280154 27 89.3 0 .....................CC.-... | T [280180] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGGGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //