Array 1 429249-430435 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMI01000001.1 Salmonella enterica strain BCW_1731 NODE_1_length_556256_cov_2.11571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429249 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429310 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429371 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429432 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429493 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429554 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429615 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429676 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429737 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429798 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429859 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429920 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 429981 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 430042 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 430103 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430164 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430225 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430286 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430347 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430408 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446606-448285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXMI01000001.1 Salmonella enterica strain BCW_1731 NODE_1_length_556256_cov_2.11571, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446606 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446667 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446728 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446789 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446850 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446911 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 446972 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 447033 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 447094 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 447155 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447216 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447277 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447339 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447401 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447462 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447523 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447584 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447645 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447706 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447767 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447828 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447890 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447951 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 448012 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 448073 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448134 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448195 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448256 29 93.1 0 A..............A............. | A [448282] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //