Array 1 3024327-3028265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQWA010000001.1 Acinetobacter baumannii strain A.bA112 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 3024327 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 3024387 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 3024447 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 3024507 29 100.0 31 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAAT 3024567 29 100.0 31 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTTT 3024627 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 3024687 29 96.6 31 ............................T CAATTGGAACGATATCAGGCTAATAACTACG 3024747 29 96.6 31 ............................G GTACAAGCCATCACATGTATCTGCTAGTTCA 3024807 29 100.0 23 ............................. ACACATGCCAGATGGTTCAAATG Deletion [3024859] 3024859 29 96.6 31 ............................G TATCGATACGCCAATGAAGCTATCAGAGTTC 3024919 29 100.0 31 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAGG 3024979 29 96.6 31 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACAA 3025039 29 100.0 31 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTAT 3025099 29 100.0 31 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGGA 3025159 29 100.0 31 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCCC 3025219 29 96.6 31 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAAT 3025279 29 96.6 31 ............................T ACCACCCATTGAACGTTAGCCATATGAGCAA 3025339 29 96.6 31 ............................T TCCATGCTTCACATAGAAATTCATTGCAAGT 3025399 29 96.6 31 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTTA 3025459 29 100.0 31 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTGA 3025519 29 100.0 31 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTTT 3025579 29 96.6 31 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTTT 3025639 29 96.6 31 ............................C AATACAAACATTTGACTGCACATCTGGAACA 3025699 29 96.6 31 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAAT 3025759 29 100.0 31 ............................. GAAACATCTGTTATTTTTATTGATGAGGTAC 3025819 29 100.0 31 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTGC 3025879 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 3025939 29 100.0 31 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAAG 3025999 29 96.6 31 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGATT 3026059 29 96.6 31 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGGC 3026119 29 96.6 31 ............................T ACAATACGACGTGATAATGCAACTAAAGCCC 3026179 29 100.0 31 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGTG 3026239 29 100.0 31 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCTA 3026299 29 93.1 31 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAAT 3026359 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 3026419 29 96.6 31 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGTA 3026479 29 96.6 31 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCAG 3026539 29 96.6 31 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACAG 3026599 29 96.6 31 ............................T AGATAATGTTGAATGGGTTGAAACTACCTAC 3026659 29 100.0 31 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTCCA 3026719 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 3026779 29 100.0 31 ............................. AAACACCAAGCCATAAAATTAATTACAGCAA 3026839 29 96.6 31 ............................T GTTTTGCTAATTTATCAATATCGATTTTCAC 3026899 29 93.1 31 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTACA 3026959 29 82.8 31 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 3027019 29 89.7 31 ....C.......G...............T TAAATGCTCAACTATTTCTGTAGCTAATGGA 3027079 28 82.8 31 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTTT 3027138 29 89.7 31 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATAT 3027198 29 82.8 30 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTT 3027257 29 82.8 31 CG..C.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAGC G [3027259] 3027318 29 96.6 31 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAAT 3027378 29 100.0 31 ............................. AGAGACACATCGTTAATAATCTCTTGTGCGG 3027438 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 3027498 29 89.7 31 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACTG 3027558 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 3027618 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 3027678 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 3027738 29 89.7 31 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGCG 3027798 29 93.1 50 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 3027877 29 89.7 30 ....G........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [3027901] 3027937 29 79.3 31 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTAA 3027997 29 89.7 31 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTGG 3028057 29 93.1 31 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTTT 3028117 29 82.8 31 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAAG 3028177 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 3028237 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================== ================== 66 29 94.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-69] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //