Array 1 29005-25841 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVAM01000014.1 Xanthomonas campestris pv. raphani strain WHRI10006 scf_17708_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 29004 28 100.0 32 ............................ TCGTGGCCCTTGGCGAGGTGGTCCATCAGCAC 28944 28 100.0 32 ............................ GTCCCGAAGACTGCCGCGCCGTATGTGCTGGT 28884 28 100.0 32 ............................ AGCGTCGCTCGGGTTTCTCGCCTAGGCGGCTC 28824 28 100.0 32 ............................ ACTGGCGCAACCATCAAGGTCGTGGCCGCCGA 28764 28 100.0 32 ............................ AACGGCGTTTACATGGTCACGGTGGCGATTCA 28704 28 100.0 32 ............................ GTCTTTGCCGGCCATTGGATGAGTCGAATTGG 28644 28 100.0 33 ............................ GTTTAGGAACCCGCGCACCGCTCAGCCCCCGCC 28583 28 100.0 32 ............................ TCACCCTGGGTGTTGTTCGCTTCTTCCACGAC 28523 28 100.0 32 ............................ ATCGAGAAGATCGTTGACGACGTCACGCTGAT 28463 28 100.0 32 ............................ AAACAGGTGCGCCGGCACAAGAAAGACGCCGA 28403 28 100.0 32 ............................ AGCGGCGTTGAGCGCCACGACGGTGTAGAGGG 28343 28 100.0 32 ............................ ACTGCTGGAGCACGCCGTCAGTGACAGGGCCA 28283 28 100.0 32 ............................ ATCGCGGACACCACGCTGGTGCAGTCGATGAC 28223 28 100.0 32 ............................ TGAAACATGCGCTTGAGGAGCTGGACGCCGAG 28163 28 100.0 32 ............................ TCCAGGCCCAGGTCGTCCAGGTCGTCCTGCGA 28103 28 100.0 32 ............................ ATTGCGGCGATGGGGTCCAGCGTGGCCAGGGC 28043 28 100.0 32 ............................ GAGGCCGCCCATGACAAGCGCGATCCCGATCA 27983 28 100.0 32 ............................ GACGATCAGGACATGGATGACGAGGGTTACGA 27923 28 100.0 32 ............................ CTGACTGTGAAGCTGATTTCTGTGTTTCGGTA 27863 28 100.0 32 ............................ ATGAGCCGGTATGGCGTGATAGTCGTGGACCC 27803 28 100.0 32 ............................ ATGGGGTGTGCATGGCCACGTGCCCCTGCGGT 27743 28 100.0 32 ............................ ATGATTTGGTGGGACCAGGGCGTGTGGTACAG 27683 28 100.0 32 ............................ CAGCCAGTTGTAGCTGTGTCCCTGGTATCGGC 27623 28 100.0 32 ............................ TGGGAGTGGCCGTACGCCTACCGAAGGGTGAG 27563 28 100.0 32 ............................ TGGGTGCGGCCTCCGGCTCGCCTGCGCACATG 27503 28 100.0 32 ............................ ATCCTTGATGGCGCCGTAGCAACGGGTGCCGC 27443 28 100.0 32 ............................ AATGAGGTCGGACGGTCGCGGCCGACGATCGA 27383 28 100.0 32 ............................ TTGTGATCGCCCGAGGTGATCTGGGTGACCTT 27323 28 100.0 32 ............................ GACCTGACGCCGATTCCAAACCAGAAGGGCAC 27263 28 96.4 32 ..........C................. TGCTGGCGGGAGTCATGCCGAACTCGGACATC 27203 28 100.0 32 ............................ TAGCTGTGTAACTGCTGCATCGGTGAGACCTG 27143 28 100.0 32 ............................ AGGTTGCCAAGCGGGTGAGGTTCTGTGCGATC 27083 28 100.0 32 ............................ GTCGACAGCGTCGTCGTTGCGCATGTCGGGAA 27023 28 100.0 32 ............................ TGGCGGATCTCCTCGGTGGTCTGGTCGATCGC 26963 28 100.0 32 ............................ AACGACGGGCCGGTCAAGTTCCACCTCGAGCA 26903 28 100.0 32 ............................ TCATTGCGCCAGACCGCCGCCTCATGCACCGC 26843 28 100.0 33 ............................ GGCCTCCATCATCTGCGCAACGGACTGCAGCAT 26782 28 100.0 32 ............................ TAGTCATGTTCCAAAGCGACAACCCAGAGGGG 26722 28 100.0 32 ............................ GCCTACAGCCGCGCATTGTCGGGTAGCGTCAA 26662 28 100.0 32 ............................ GCCTAAGTGCATGGCCATTGATCGCTACGATC 26602 28 100.0 32 ............................ TAGGTCGTCGGCGACCAGGCCACCGTTGAACA 26542 28 100.0 32 ............................ GCCGCCCATCTCTGGCTGATCGCCATCTGCGG 26482 28 100.0 32 ............................ ATCTCCACGACCTCGTTCGGGGTGTCCTGCGT 26422 28 100.0 32 ............................ GAGACTACCTGATGATAACCAATCCCGACACC 26362 28 100.0 32 ............................ TACGACACCGGCTGCGTCTCGCGCCGCGTCTG 26302 28 100.0 32 ............................ CACGACCGGATTCGCGGCCCACGCTCCCACTC 26242 28 100.0 32 ............................ ATTTCGCGCCGTGTTTCGACCTATCCGCATAC 26182 28 100.0 32 ............................ CAGGGGATAGCCGGCCACGATGACGTTGCGGC 26122 28 100.0 32 ............................ AAGACGCATTCGGCGCCATTGGTCCATGTCTT 26062 28 96.4 30 ......................G..... TCGTTCCGCACGGGTACCGCATGCATCGCA G [26036] 26003 28 82.1 107 ....G.......AC......T..T.... AAGCAAAGTCCTGCCGCTCGGCGCCTCTGAAAAATTCACTGTCGTATGGACAGGAAAAATGGCGGCCATCCTCGGCCACTTGTGATCGATCTATGCATTACTGGACC 25868 28 67.9 0 AC.......T.T.G....T.TC....T. | ========== ====== ====== ====== ============================ =========================================================================================================== ================== 52 28 98.9 33 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCGTTGCAGGCATTGATGGCAAGCGGGTGGCTGCAAGGCATGCACGATCACCTGACCGCATCGGACATCCTTTCGGCGCCTGCCGGCGCCCAGCACCGGCAGGTCACGCGGGTGCAGGCCAAGAGCAGCCCGTCGCGCCTGCGTCGTCGGGCCATACGCCGCCATGGGATCGACGCCGACACAGCCACCCAGCGCATCCCGGACACAGCAGCCGAACATTTGCAGCTGCCGTTCGTGGTCCTGGGTAGCCGCAGCACTGGACAAGCCTCCTTCCCATTGTTCATCCGCCACGGGACCCTGTTGTCCGAACCAAGAGCCGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTTCCCAAGCAGGAAAGGGCCGCTTTGAAATCAATCACTTGGCAGGCACCCTGTGCGAAGGGTGCCTGCCTTTATTTCTTGGCTTTTCTTTAGATATCAATGGATTGGATGAATTCTGATCTT # Right flank : GAAGCCGCGCCTCCACCTACTGCTATCGCCAACGCCTGCCATCGACGCCTGCATCGCATCGTCGCGCGGCGGGCTTATCTGCGGATTCGGCTGCGCCGAGCGCATTCAACGCAGCCTGGCGCCGCGAACACGGCCGATTGAAGCGTCATGGATTACAGGCGCTGCCACTCCAGCCCTTCGCCTCGCCGGTAATACACCGCCACCGCCTTACCGTAGACCGCAGGTGCATCGACCAGTCCGAAATAGCGCCCATCCAGGCTGTTGCCGCGATGATCGCCCAGCATCAGCAGCTTGCCGGGCGGTACTGTCAGCCCGGCGATGTTCGGGCCGCCGCCATTGCCGAGATTCAATGGCGCCAGATGCGCGCCGAAGCGTTCGGCATCGCGGCCTTCCGACGCCAGGGGCTCACCGTTGATCTGCAGATGGCCGTCGATCAAGTCGACCCGGTCGCCTGCCACCGCCACGACCCGCTTGATCAAGCGTGTGCCATCGCGCGGCGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //