Array 1 190340-194278 **** Predicted by CRISPRDetect 2.4 *** >NZ_VANB01000014.1 Acinetobacter baumannii strain M3 M3_L1.R1.clean__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 190340 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 190400 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 190460 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 190520 29 100.0 30 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAA 190580 29 100.0 30 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTT 190640 29 96.6 29 ............................G TATCGATACGCCAATGAAGCTATCAGAGT 190700 29 96.6 30 ............................T CAATTGGAACGATATCAGGCTAATAACTAC 190760 29 96.6 30 ............................G GTACAAGCCATCACATGTATCTGCTAGTTC 190820 29 100.0 22 ............................. ACACATGCCAGATGGTTCAAAT Deletion [190871] 190872 29 96.6 29 ............................G TATCGATACGCCAATGAAGCTATCAGAGT 190932 29 100.0 30 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAG 190992 29 96.6 30 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACA 191052 29 100.0 30 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTA 191112 29 100.0 30 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGG 191172 29 100.0 30 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCC 191232 29 96.6 30 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAA 191292 29 96.6 30 ............................T ACCACCCATTGAACGTTAGCCATATGAGCA 191352 29 96.6 30 ............................T TCCATGCTTCACATAGAAATTCATTGCAAG 191412 29 96.6 30 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTT 191472 29 100.0 30 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTG 191532 29 100.0 30 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTT 191592 29 96.6 30 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTT 191652 29 96.6 30 ............................C AATACAAACATTTGACTGCACATCTGGAAC 191712 29 96.6 30 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAA 191772 29 100.0 29 ............................. GAAACATCTGTTATTTTTATTGATGAGGT 191832 29 100.0 30 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTG 191892 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 191952 29 100.0 30 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAA 192012 29 96.6 30 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGAT 192072 29 96.6 30 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGG 192132 29 96.6 30 ............................T ACAATACGACGTGATAATGCAACTAAAGCC 192192 29 100.0 30 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGT 192252 29 100.0 30 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCT 192312 29 93.1 30 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAA 192372 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 192432 29 96.6 30 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGT 192492 29 96.6 30 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCA 192552 29 96.6 30 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACA 192612 29 96.6 30 ............................T AGATAATGTTGAATGGGTTGAAACTACCTA 192672 29 100.0 29 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTC 192732 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 192792 29 100.0 30 ............................. AAACACCAAGCCATAAAATTAATTACAGCA 192852 29 96.6 29 ............................T GTTTTGCTAATTTATCAATATCGATTTTC 192912 29 93.1 30 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTAC 192972 29 82.8 30 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACG 193032 29 89.7 30 ....C.......G...............T AAATGCTCAACTATTTCTGTAGCTAATGGA 193092 28 82.8 30 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTT 193151 29 89.7 30 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATA 193211 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 193271 29 82.8 30 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAG 193331 29 96.6 30 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAA 193391 29 100.0 30 ............................. AGAGACACATCGTTAATAATCTCTTGTGCG 193451 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 193511 29 89.7 30 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACT 193571 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 193631 29 86.2 30 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATAT 193691 29 79.3 30 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATT 193751 29 89.7 30 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGC 193811 29 93.1 49 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCT 193890 29 93.1 29 ....G........C............... CCAGTTTGCTGAAAATCACCAATACGGTC 193950 29 79.3 30 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTA 194010 29 89.7 30 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTG 194070 29 93.1 30 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTT 194130 29 82.8 30 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAA 194190 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 194250 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================= ================== 66 29 94.6 30 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-76] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //