Array 1 25258-25953 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJHNW010000004.1 Clostridium perfringens strain P147 CP147-S6-103121_contig_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     25258	    36	  86.1	    30	A...C.TA..A.........................	TAAAGAACCTAAGGTAAAACCTAAAACAAA 	A,A [25260,25270]
     25326	    36	 100.0	    31	....................................	CATACAATAATAGACTGTAATAGTTCCGCAA	
     25393	    36	 100.0	    30	....................................	ATAGAAAAAAATGCTACTAACATAGATAAA 	
     25459	    36	 100.0	    29	....................................	ACAGCTGCTAGAGTATTGGCTCAAAATGG  	
     25524	    36	 100.0	    28	....................................	AGAGCATATAGAAGTTATCGAGGAGGAA   	
     25588	    36	 100.0	    30	....................................	CAGGAATGCAGAGTTTATGTAATTTTATCT 	
     25654	    36	 100.0	    30	....................................	TCTTATATTAACCAATACTTCGATGTTGAA 	
     25720	    36	 100.0	    30	....................................	AACATTTACCATTGATCCTCCTAATGCAAC 	
     25786	    36	 100.0	    30	....................................	TTTTTTCAGGTTCTCATCCTGCGCAAAGAA 	
     25852	    36	 100.0	    30	....................................	TGATAAGTATATTAATCCTAAGAAGATTTT 	
     25918	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        11	    36	  98.7	    30	GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT	                               	       

# Left flank :   AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAAATTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA
# Right flank :  TAGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//