Array 1 946853-948466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045954.1 Salmonella enterica subsp. enterica serovar Saintpaul strain AUSMDU00010531 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 946853 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 946914 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 946975 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 947036 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 947097 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 947158 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 947219 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 947280 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 947341 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 947402 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 947463 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 947524 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 947585 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 947646 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 947707 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 947768 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 947829 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 947890 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 947951 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 948012 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 948073 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 948134 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 948195 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 948256 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 948317 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 948378 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 948439 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 964726-965548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045954.1 Salmonella enterica subsp. enterica serovar Saintpaul strain AUSMDU00010531 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 964726 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 964787 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 964848 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 964909 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 964970 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 965031 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 965092 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 965153 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 965214 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 965275 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 965336 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 965397 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 965458 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 965519 29 96.6 0 ............T................ | A [965546] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //