Array 1 924-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTY01000063.1 Salmonella enterica subsp. enterica serovar Hartford strain BCW_4012 NODE_63_length_27477_cov_1.68109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 923 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 862 29 100.0 32 ............................. GAAAAGAAGAAATAATGAGATTTGCCCCGGAA 801 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 740 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 679 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 618 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 557 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 496 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 435 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 374 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 313 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 252 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 191 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19652-18126 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYTY01000058.1 Salmonella enterica subsp. enterica serovar Hartford strain BCW_4012 NODE_58_length_29745_cov_1.67685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 19651 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 19590 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 19528 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 19467 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 19406 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 19345 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 19284 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 19223 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 19162 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 19101 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 19040 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 18979 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 18918 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 18857 29 100.0 63 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAACCGTCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 18765 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 18704 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 18643 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 18582 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 18521 29 96.6 32 .............C............... CAACTGGTGATACGGTTATGTCTCGTATCGCA 18460 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 18399 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 18338 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 18277 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 18216 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18155 29 89.7 0 A...........TC............... | A [18128] ========== ====== ====== ====== ============================= =============================================================== ================== 25 29 98.2 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //