Array 1 61143-60259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQH010000003.1 Klebsiella sp. M5a1 M5a1_Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61142 29 100.0 32 ............................. GTTCCAGTGATTCAGGATCTGGCCGATAGTTG 61081 29 100.0 32 ............................. CTTGGCGATCCTGTTCGTGAGGTATTCGGAAG 61020 29 100.0 32 ............................. ATTGACCAGGCTTCCGCTGACCGACTGTTGAA 60959 29 100.0 32 ............................. GCACTGACACACGAGGAGCTTTGCCAGTTAGC 60898 29 100.0 32 ............................. ACTCCCTTCTTGCCTGCTTCCACTGCTCTGAT 60837 29 100.0 32 ............................. TTATCTCAGGATATGAGTAGAACAGCAAAAAA 60776 29 100.0 32 ............................. GTTTGTTTCTGTCTCTTCGCGCATTCCTTAAG 60715 29 100.0 32 ............................. AACGGGCGCAGATATCCATAGGTCCACGTAGC 60654 29 96.6 32 .........A................... TTACTGGAGATCTGATGCACTTGCGTTCAAAT 60593 29 100.0 32 ............................. AAGATCAACCCGCGGATGAACACATTGATGCC 60532 29 100.0 33 ............................. GCCAGTGAACAGCCTGGCGCTGTGGCTGAATAA 60470 29 100.0 32 ............................. CCGGTACCGCGCACGTCAAATACTGAAGATGG 60409 29 100.0 32 ............................. CCTATGAAGTCAGCAACCTCGGACGGGTCCGC 60348 29 100.0 32 ............................. GCGGTGAACTCAGTTGCAAGTGGGCAGGGTGA 60287 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCAAACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACCCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGTGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : CAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGTTCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42287-43720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQH010000009.1 Klebsiella sp. M5a1 M5a1_Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42287 29 100.0 32 ............................. CAGCTGCGCATTGCTGGCGCCGGTCAGCGCGT 42348 29 100.0 32 ............................. GGGCACGGTAGACGCGCCAGCAGGCAGCGCAG 42409 29 100.0 32 ............................. TTGACTCCTGCGCCAGGTCGGGGCGCTGCCGT 42470 29 100.0 32 ............................. TTACCGCAAACGCGGCGCATAGCTTGATCACG 42531 29 100.0 32 ............................. CCGATCAAAGTCAAAACCGGGATCGTGATGCC 42592 29 100.0 32 ............................. CATCGCCCCGAGCTTATCCCGGCATATCGTGA 42653 29 100.0 32 ............................. CGACTGCTCGAGATTGCCGACGCGCTGGTCGT 42714 29 100.0 32 ............................. GCACTGAGGACAGAGGCGTGTAGTGTCAGAAT 42775 29 100.0 32 ............................. ACCATAGAACCAAAATCAACCTCAGGGTCAGC 42836 29 100.0 32 ............................. ACAACGCACCGCGGCAGAACAGCGAAAAGTTA 42897 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 42958 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 43020 29 100.0 32 ............................. ACTTGTTCAGAAAAAACCCCATTAGGAGGTTA 43081 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 43142 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 43203 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 43264 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 43325 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 43386 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 43447 29 100.0 32 ............................. CCTATAACCGACGAAGGCAAGCGCCGCGCACG 43508 29 100.0 32 ............................. CGATCCACTTTCTCACCGCAGAGCAAAAAGAA 43569 29 100.0 32 ............................. CCTGCCGTTGACGTCAGACATCAGACACTAGC 43630 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 43692 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GGTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAATTTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //