Array 1 52762-42994 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYK01000010.1 Brachyspira aalborgi strain PC2022III PC2022III_contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 52761 31 100.0 37 ............................... AATCTGTTTGCAAATTCATTTCCTAGTGCCCATACGG 52693 31 100.0 37 ............................... GGTCTTGTTTTTGATATGTTTTTTGGTTTCCATTTAG 52625 31 100.0 36 ............................... AAATCCCATATTTCATTTTGAAATTTCCTTAGTTCG 52558 31 100.0 36 ............................... ATTTATCGGTAGCGGTTTTATTTTTTTTCTACCGTG 52491 31 100.0 36 ............................... ATTTATAGCATTATGTTAATGCCTGGGGATGTTATA 52424 31 100.0 36 ............................... TATGTTTAGTCCGAACTTTTGTGCAGCTAATCTGAC 52357 31 100.0 36 ............................... TGAATTGAGTTCTTTCTATTGAGTTGTCTGTTATTT 52290 31 100.0 36 ............................... CTCGTATATGCTATACCTCTAGAGTCTTTTAGCCTT 52223 31 100.0 36 ............................... TACATATTCGATAAGATTGAAGATGAGCAAAAGCCA 52156 31 100.0 36 ............................... CTTGTAAGTCTGCTGCTCTTCTTTGTACGGCTGTAT 52089 31 100.0 37 ............................... TGGTACTTCAGAAGTGTATTCCTCAAAACCCGATAGG 52021 31 100.0 36 ............................... TCGGAGGAAACGCAGGAGGAGAGGCAGAGAAAGGAG 51954 31 100.0 36 ............................... AATTACTTCAAAAGAAAAATTAAAGCAGATATTATG 51887 31 100.0 36 ............................... ACGCCGTCTCTTTCGTTAGTATTATTAGCTGTTTGT 51820 31 100.0 37 ............................... TAACGCTTTCTTTAATTTTTCGTTTAAAGTAAGTCGG 51752 31 100.0 36 ............................... ATTGGCTTGTTGTTGTGCGTTAAATTTATCTTCCCT 51685 31 100.0 36 ............................... TACATATCGCCGACGCCGTCTCTTTCGTTAGTATTA 51618 31 100.0 36 ............................... TTTATCAAGACTGCGATATTATAATCGCCCGCGCTG 51551 31 100.0 36 ............................... AATTCAGATTTTAGAAAAGTTTACGCGCTTGTTCCG 51484 31 100.0 37 ............................... GTAAAAATTTTTGTATCGATATTATATCTCGCTTTTT 51416 31 100.0 36 ............................... TTCTAAAAGGGGGGGCAAAGATTCAAAAACGGAATT 51349 31 100.0 37 ............................... AAATATAATCAAAAGTATTTTGAAAGTATGAAAGTAG 51281 31 100.0 36 ............................... GAGATAGGTAGTGGTGGACATTATCAAGGATTTATA 51214 31 100.0 36 ............................... TCGGTAATGGTATCCACTTACTCATATGCGTCTAAC 51147 31 100.0 36 ............................... AAATTACATTTAAGTAGAAATTGTATAGAAGAAGGG 51080 31 100.0 36 ............................... TTTTCATATAGTATTTTTCTTGCTCTAAATCTTTTA 51013 31 100.0 36 ............................... GCCCTTTACTCGCTTTCAAACCATCAAAAGAAACAT 50946 31 100.0 37 ............................... CCGAAATTAACTCAAAATACGAATGGAATATATGAAA 50878 31 100.0 36 ............................... AAGATTTACAAATGACTTATCAATTCTTATATGGTA 50811 31 100.0 36 ............................... TTGTTTACTCTTATTAATAGCAATCGTATAACTTAA 50744 31 100.0 36 ............................... TGAAATAATACATATCTATAGTTTCTCTTTCCTTAT 50677 31 100.0 36 ............................... TCAAAAGTATCTTTTAAATATTCTTCGTAAGCTTCG 50610 31 100.0 36 ............................... AGATAACTGAAAACGATTACAAGGCTTTATATAAAG 50543 31 100.0 37 ............................... ATAAGTGGTTTATTCAATATAGAGTATATCTTTGAAG 50475 31 100.0 37 ............................... CGACAGTATCGGCAAGAGTAAATGAAATGTTGAGAAA 50407 31 100.0 36 ............................... CGTCAAGTATCGGCAATAAAAAAGAAAGCAAAATTA 50340 31 100.0 37 ............................... CTTCTTTAATTAAATTACACATGCGATATTTATAAAA 50272 31 100.0 35 ............................... GAAAATTTTAAAGCTGGAGACTTGTTTATGTTAAA 50206 31 100.0 36 ............................... CTATCGGCGTTCGTTATAATAAATCGCGGGTAATAA 50139 31 100.0 36 ............................... TTTTGTGGATGCGGAACTACATTAGATGCCGCTCAA 50072 31 100.0 36 ............................... ATAGCTTTTAATTTATCGAAAGCCTCTTTATTTAAT 50005 31 100.0 37 ............................... CGTAGTAATTTGTCGATTGACAAGATAACATCATCAA 49937 31 100.0 37 ............................... GCAATAGCGTTAATTAGATGCATTGATTCGATTGCTA 49869 31 100.0 36 ............................... TTCGTAAAATGGAGCGTAGGGTTAGGAAAAGATTGG 49802 31 100.0 36 ............................... GGCTTTTGAGGAGTTGGCGTATTTCCAAATCCATTA 49735 31 100.0 36 ............................... CTAAAAGCAAAATACGATAAAGAAGGATTAACAATA 49668 31 100.0 37 ............................... TATTCTCCGCACATTATATATTTTAATTTATTTTTAT 49600 31 100.0 37 ............................... TGCTTATCACCTCCTTTTTGTTTTCTTTGCTTTTCTC 49532 31 100.0 36 ............................... TGGGGCAAGAAGCAGCAAGCGGAGGAATGACTACTT 49465 31 100.0 36 ............................... TCGTCTTCATCCGTTCCTTGTGCAAAAATCTCTCTG 49398 31 100.0 36 ............................... AGGCATATGAGGTAGTAATCTTCGCTTCTGTAGTAT 49331 31 100.0 36 ............................... ACATTACTTAAATCAAAAGAATTGTCATTTAAATAA 49264 31 100.0 36 ............................... CGTCTCCCATATTACTCTCCTAATTTCCAATTATCG 49197 31 100.0 37 ............................... AAATGTATCCGTATGCTTGTCTAAAGTAGTCTATTTG 49129 31 100.0 37 ............................... GCTGCTTGGTGGTCTGCTACTGACCTTTGAATTGCGT 49061 31 100.0 36 ............................... AATTACAGAAATAAACAATAAAATTGAAAAAAGTAA 48994 31 100.0 36 ............................... GAATATGAAGCGAAAGAAAGAGAATTTATAATGAAC 48927 31 100.0 36 ............................... TATGTAAGTTTTTATTTTTTTATTTTTTTGACGATA 48860 31 100.0 36 ............................... AGCATTATTCACCTCCTTTTGCTTTATTTATTATCT 48793 31 100.0 36 ............................... CTGTAAATATGTGTTCTTGACTTAAGTCAAAATAAT 48726 31 100.0 36 ............................... TAACATATGGGAATTCGATAATTGGAAATTAGGAGA 48659 31 100.0 36 ............................... TTTAGTTCTTAAATATCTTTCTATATATATGTTTGT 48592 31 100.0 36 ............................... ATTTTTCAAAATCGGCTTTTTCATTGGTAGGTGGTT 48525 31 100.0 36 ............................... GAGACAAAAAAATACGATATGGTATGAATAAGATTT 48458 31 100.0 36 ............................... GGTATTAGTATTGTTGAATAAATCGGGTATATTAGC 48391 31 100.0 37 ............................... TTGCCTAAATGGAAACCAAAAAACTTAGAAAAGACAA 48323 31 100.0 37 ............................... GATAGTGATCGTATCCAGCTTTCTAATTTCATTATAA 48255 31 100.0 36 ............................... TATTGCTTTTACTTTTGATATAAAGTTATCCCATTT 48188 31 100.0 36 ............................... TTTGATTAAGCGAAACGACCAACCCCCGACCCCTTC 48121 31 100.0 36 ............................... TTTTTATGTAATTTCTATTGCGATTTTAAAGCGTTG 48054 31 100.0 36 ............................... GTTTTAGTATAAGCCCAAAATTCTTCCCAGTCCAGA 47987 31 100.0 35 ............................... GTCTCTTTAGCAGACAATCGAACTAACGCTTACGC 47921 31 100.0 36 ............................... TATTTACATATGATAGGCTTTTGTTATAATTATGGT 47854 31 100.0 36 ............................... TTTTGGTAATGGTTCTTTCCATTCTTTTTCTGATGT 47787 31 100.0 36 ............................... TTTTTATGTAATTTCTATTGCGATTTTAAAGCGTTG 47720 31 100.0 36 ............................... GTTTTAGTATAAGCCCAAAATTCTTCCCAGTCCAGT 47653 31 100.0 36 ............................... TTTTTATGTAATTTCTATTGCGATTTTAAAGCGTTG 47586 31 100.0 36 ............................... GTTTTAGTATAAGCCCAAAATTCTTCCCAGTCCAGA 47519 31 100.0 35 ............................... GTCTCTTTAGCAGACAATCGAACTAACGCTTACGC 47453 31 100.0 36 ............................... CGATAGTCAAGTTTTCAAATGAAGCTTTAAAAATAA 47386 31 100.0 36 ............................... TCCTTCTGTTTATCTCTTACTCACTGACGAAGAGAT 47319 31 100.0 36 ............................... AAGTCAAATCGTCTCCGTCAAAAGTTATGTTGACTA 47252 31 100.0 36 ............................... GGTCAAGTCAACAAAATTCCTCTCGTCATCGATGAC 47185 31 100.0 36 ............................... GCAGGCTTTATACTTAAAATTAATCTTCTAAAATAT 47118 31 100.0 36 ............................... CTTCGCTCTAGTTTAATTGAAAGTCAAAACGAAATA 47051 31 100.0 36 ............................... TGTCTATAGCGGCGATGTCGCTATAGTCGGAGACGG 46984 31 100.0 36 ............................... CGATACGGCATTAAAAAAGTTGTCATTGTCGGCACT 46917 31 100.0 36 ............................... ATTGAGTCATAATCTATATTTCCGTCTTCATGATTA 46850 31 100.0 36 ............................... CTCTTCTCTCCGAAAGCGGGAACTCTTCTATATTCT 46783 31 100.0 36 ............................... GTTTGCCTTCTGCTCTAAAATATGATTGCTTGTTTT 46716 31 100.0 37 ............................... AATCGGTATATTTGTCTACATCTCTTAAAGCCTCTTG 46648 31 100.0 36 ............................... CTCTTACTAATTGCTCTAAATTGTCTATGCTGTCAT 46581 31 100.0 37 ............................... GCCAAAACTGTCGCAAGAATACTTATAAAAGATTTTG 46513 31 100.0 37 ............................... GCTATAGAATGGGAAGAAGGAACAACGCTTTTGGTAA 46445 31 100.0 36 ............................... CTTTTTTACCTTCTTCTTTACCTTGCGCTATTCCAA 46378 31 100.0 36 ............................... TATAAGTTTTTCTATTTTGATAAAATTGCCTTTCTT 46311 31 100.0 36 ............................... TTGGTGTTCCTAGAACTTGTTTAGGTAAAGAAGTAG 46244 31 100.0 36 ............................... CGAAAACTTAAAGTAAAAACTTTCTCTATAAAATAA 46177 31 100.0 36 ............................... CGCTTAACACAGTAAACTTTTTAGTGTCGTATTGAC 46110 31 100.0 36 ............................... CTGTTAAATCTTCTGTGTTATATTTTTTTCCCATTT 46043 31 100.0 36 ............................... TTTTATCATTTATAGTGCCGACTGCGACTTGGTAAA 45976 31 100.0 36 ............................... AATACATGGTAATGGGGGATAAAATATTATCATTGC 45909 31 100.0 37 ............................... AATTTGTGTTAGGTGCTGTTTGGAATACAGTTTCTGT 45841 31 100.0 36 ............................... TTCGGGAATAACGATTTCTTTTCAGATGCAGATACA 45774 31 100.0 36 ............................... GCTTACTATTATAAACGATTTTATAATATAACAACA 45707 31 100.0 36 ............................... AAACATATTAGCTTATAATCATTTTCATCATAATAA 45640 31 100.0 36 ............................... TAAACATGGTCAATTAATCCTGGTTGATTAAATAAC 45573 31 100.0 36 ............................... TCTTCTCCGTCTTCATCGTCTTCTAAAAAAAATATA 45506 31 100.0 36 ............................... CCATGAGCTGTGCGTCTTTTAACTACTTGTAAATAT 45439 31 100.0 37 ............................... TAAAAACTAAATAAGCAAGTATTCTTGGATTTTGAAA 45371 31 100.0 37 ............................... AATTTTTTAGCATATAAATTTTGCAATTCTCTTCTTG 45303 31 100.0 35 ............................... TATGATAATGAGCTCTTTTTGTATTATTTTCTCCA 45237 31 100.0 36 ............................... TAATACAGGATTTGGCAATGATGTAGTGAAGTAATC 45170 31 100.0 37 ............................... GGCATTAACATTATCGAATATATTGGATATATTATTC 45102 31 100.0 36 ............................... GTTCGTTTTACGCTGTCGTTGTTGTTGTTGTTTCAG 45035 31 100.0 36 ............................... TCTTTCTCAGGAAATTGTATATAATAAGGAGGTATA 44968 31 100.0 37 ............................... GGCATTAACATTATCGAATATATTGGATATATTATTC 44900 31 100.0 31 ............................... GTTCGTTTTACGCTGTCGTTGTTGTTGTTGT 44838 31 100.0 37 ............................... GGCATTAACATTATCGAATATATTGGATATATTATTC 44770 31 100.0 36 ............................... GTTCGTTTTACGCTGTCGTTGTTGTTGTTGTTTCAG 44703 31 100.0 36 ............................... TCTTTCTCAGGAAATTGTATATAATAAGGAGGTATA 44636 31 100.0 37 ............................... AATTCTAACTTGAGCCAATTATCTTGTATTCTCTTTA 44568 31 100.0 36 ............................... CCATAAATTGTTTCTGGTTTTATATACATCAGTTTC 44501 31 100.0 37 ............................... TTTTTTATTATATAATATTTTTATTACATGAAACATA 44433 31 100.0 35 ............................... GCTCTTCTTTTTTTACTTTTTTACATCGCAGACAT 44367 31 100.0 36 ............................... ATACGAATTTACGTCACCACTGCTTATTTTTTTCTG 44300 31 100.0 36 ............................... GTTTCCTCGTTCGCTTCATTAAAAGATTTATTTTTG 44233 31 100.0 36 ............................... CACTCTGCAATTATGCAATCTTGCGATTTTGTAATA 44166 31 100.0 37 ............................... ATCGTCATTGATGACGACAGAGGAGACGAAGCTTTTA 44098 31 100.0 36 ............................... ATTTATAGCTATGGAAGAGTTAGTTGCTTTAAATAG 44031 31 100.0 36 ............................... CTTTTCATTAAAAAAACAGAAGCGGGAGTTGGCTCA 43964 31 100.0 36 ............................... GGTAAGCTACGAAGTATGAGTTTTCCTTTCGTGCTT 43897 31 100.0 36 ............................... CTTGTCGAACAGACAAGCAAGATTTACAAACTATAC 43830 31 96.8 36 .....G......................... TTTATAGTAGATTTTAATTTATTTGCAAATTGTTGC 43763 31 100.0 37 ............................... TTATTCCTACAATCTTCTTTTTCATATTCTTTCTCTT 43695 31 100.0 36 ............................... GTTATAATCTTCACCTTCCCTATCTTCACTTCTTTC 43628 31 100.0 36 ............................... CGTTTTGTGGATTATCTTCTATAAGTTTATTGAATA 43561 31 100.0 36 ............................... TTCTTTAAAAAAGAATTATATTCCTTTTTCAAAATA 43494 31 100.0 36 ............................... ATACTTTTAAAGATGGTATAAGTTTACCTATTGTTA 43427 31 100.0 37 ............................... TCAAAAGTTATATGTTAAATATTCTATCGCCGCCGCA 43359 31 100.0 36 ............................... AAACTATAAGCATCGTGTTTATAAGGTTGAAAATTC 43292 31 100.0 36 ............................... AAAAATTATAATAGTAGAAGTTGGCAGAATATGGTA 43225 31 100.0 36 ............................... AATGTATAATTAGGGCATTAAAAAAAATGAAGTATA 43158 31 100.0 36 ............................... TTGGTTATAGTCGCCCCTCTTGATGCGATAAACTAC 43091 31 100.0 36 ............................... TTTATTTCTACATCGAGCATTTCAAATATATTATTT 43024 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 146 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTAAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTAAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : GGTCTTGTCTTTTCTATACTTGATGGTTTCCATTTAATAATAAATCTAATCATAAAAAAGGATGGGAGCAATTTTTAAAAACGGCTTAGGCTATAGATAAGGATTTTGGAAAAGGTAATAGAAATTTAGATAGAGATATTACAAAAGATAAGGGCAGTTTATTTTACAGCAATATTGAACCAAGCGAAAAAGAGAAAAAATATAAAGCTATTTTGATCGAATTTTTAAAAGAGCAAAGAACTAATATAGAAATTAAAGATTTCGGTTTGAATAACGGTTTTTTGACAAAACATACAAATAAAATATTTAAAGAAATACAAAATAATTTAGATTGCAAATATTATAATGATGCCCAAAAAGGCTTTCATTTAGACGATAAAAAAATAAATGTTAAAATAAGGTATAAAAATAAAAATTAGCAAAATAGAATGGACTGAAGCAAACTGGAATCCAACTATAGGATGCGATAAAGTAAGTAGCGGTTGTAAAAATTGCTATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //