Array 1 93121-94491 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEZ01000007.1 Escherichia coli strain OU-NP007 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93121 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 93182 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 93243 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 93304 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 93365 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 93426 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 93487 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 93548 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 93609 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 93670 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 93731 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 93792 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 93853 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 93914 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 93975 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 94036 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 94097 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 94158 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 94219 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 94280 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 94341 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 94402 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 94463 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96026-95022 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEZ01000013.1 Escherichia coli strain OU-NP007 sequence013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96025 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95964 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95903 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95842 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95781 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95720 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95659 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95598 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95537 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95476 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95415 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95354 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95293 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95232 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95172 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 95111 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 95050 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //