Array 1 38251-39655 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFTF01000043.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38251 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38311 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38371 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38431 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38491 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38551 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38611 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38671 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38731 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38792 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38852 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38912 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 38972 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 39032 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 39092 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39152 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39208 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39268 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39328 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39388 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39448 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39508 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39568 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39628 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49830-48181 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFTF01000043.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49829 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 49769 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 49709 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 49649 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 49589 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 49529 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 49469 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 49409 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 49349 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 49289 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 49229 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 49169 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 49109 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 49049 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 48989 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 48929 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 48869 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 48809 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 48748 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 48688 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 48628 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 48568 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 48508 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48448 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48388 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48328 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48268 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 48208 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7994-7066 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFTF01000068.1 Pseudomonas aeruginosa strain AUH-PA28 scaffold_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7993 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 7933 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 7873 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 7813 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 7753 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 7693 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 7633 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 7573 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 7513 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 7453 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 7393 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 7333 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 7273 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 7213 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 7153 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 7093 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //