Array 1 73974-75892 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLB01000015.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal681 sal681_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73974 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 74035 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 74096 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 74157 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 74218 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 74279 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 74340 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 74401 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 74462 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 74523 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 74584 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 74645 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 74706 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 74767 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 74828 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 74889 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 74950 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 75011 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 75072 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 75133 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 75194 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 75255 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 75316 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 75377 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 75438 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 75499 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 75560 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 75621 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 75682 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 75743 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 75804 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 75865 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84025-84663 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLB01000015.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal681 sal681_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84025 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 84086 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 84147 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 84208 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 84269 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 84330 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 84391 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 84452 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 84513 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 84574 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 84635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GCGGCTATGTCGTAACATTCCCGGACATCCCCGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-507 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLB01000032.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal681 sal681_contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 112 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 173 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 234 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 295 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 356 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 417 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 478 29 100.0 0 ............................. | A [505] ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGCCCGTATATGGATTTAACTTTATCAGCGGCTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //