Array 1 2206308-2207800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWSP02000004.1 Salmonella enterica subsp. houtenae serovar 50:g,z51:- strain FDAARGOS_55 scf7180000000019_quiver_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2206308 29 100.0 32 ............................. CAACGCCCTGACATTCTCACGCCCGCGCGAAA 2206369 29 100.0 32 ............................. GGACTTCCCACTCAAAAACAATTCCTACGTTA 2206430 29 100.0 32 ............................. TTAGCGGGTTAGGGTATCTCACAGGGAGAATG 2206491 29 100.0 32 ............................. AGCAGTGGAAAGTTGAGGGATTTCAGCCCTAT 2206552 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 2206613 29 100.0 32 ............................. AGTGCATCGAGGCGACCAGCGCGGTGCTGACA 2206674 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 2206735 29 100.0 32 ............................. TGATTTTATAAAATTCTGTAAACGCAGTTGGC 2206796 29 100.0 32 ............................. GCGACCTAAGCCGCGCTCAGTTGCTTAGCCAT 2206857 29 100.0 32 ............................. CGGTCGCCATTTGTGGGCAAGATTTTGCGGTA 2206918 29 100.0 32 ............................. GGCAAAAATCCTATTTTGGAATTGCCAACAGG 2206979 29 100.0 32 ............................. CTACGGCGAAAATCGCCCATTAAACCACGACC 2207040 29 100.0 32 ............................. GATGTAGCTGAACTTCTGGAGGTGCTGAAATC 2207101 29 100.0 32 ............................. CATCCAATGTCCAGACACCCCAAATCACTGTA 2207162 29 100.0 32 ............................. GTGGTGAGAGATTGTCGTCTGATGTTGTGGCT 2207223 29 100.0 32 ............................. CGCCCGAAATTGCCGGATAATGCTTCATGTGA 2207284 29 96.6 32 ............................A GTAACGCGCCTTACTTCTGAACGTGATAAATA 2207345 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 2207406 29 100.0 32 ............................. GAATGCTTAAAACGCCGGATGATTTAACCGGA 2207467 29 100.0 32 ............................. AACAACCAGTAACAGCAGTACAGAGAACGCCC 2207528 29 100.0 32 ............................. AAACTATTTCTGGAATGCAGGAAAAAGACCCG 2207589 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 2207650 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 2207711 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 2207772 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCACCGGAGTAGCTGACAATGAGTATGTTAGTTGTTGTTACAGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGGTATGGCAGCAGATCTCTATTCTGGCAGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGACTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGTGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCACCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //