Array 1 26515-25694 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000022.1 Alkalihalobacillus clausii strain J32TS2 sequence22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 26514 32 100.0 34 ................................ CACATTAAAAAGTTAGAAAACAAAAATACAATGC 26448 32 100.0 33 ................................ AATTACGATCACAGTATCCGACATCCGAAATCA 26383 32 100.0 34 ................................ CACGCATACTTAATCGACCGCACACGCGAACTTT 26317 32 100.0 33 ................................ GATTAGAAGCTCAACGATCTGATCGAACTCCTC 26252 32 100.0 37 ................................ GCTCGCGGCCGTGGAGTATAAGTCCTTGCCGCTTCGA 26183 32 100.0 33 ................................ AGTCGCCCAATATTCGCGCTGACCCGTGTTTTC 26118 32 100.0 32 ................................ TGATTCAAACAGATTTGATAAGTGGCTGAGAA 26054 32 100.0 33 ................................ CATTTTCAAAGATGAGTTGTGTTTGAGCGCTTT 25989 32 100.0 34 ................................ TATAAGCCAGAACTGTTTAACGTTTTGTTGATAG 25923 32 100.0 34 ................................ GCAGCCATTTCGCGTACCTCCTTCGGGCCAAATT 25857 32 100.0 34 ................................ TTGGGGTTGGGGAGGAACAACAAAAAATAACTCT 25791 32 100.0 34 ................................ CCGCAATAGCTGGAATAATTGTTGCTTCACTAGC 25725 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 34 GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Left flank : CAATGATCTGGACGTTTATCCCCCATTTATGTGGAGGGGATAGCTTTGTTAGTGCTTGTAACCTACGATGTGGCAATTACAACAAACGGCGGAGCGGCCAGATTGCGGAGAGTGGCTAAGATCTGTGAGCAATATGGTGTTCGAGTTCAAAATTCTGTTTTTGAATGCATTGTAGACGCGACCCAAAAAAAGAGGTTGGAAATGGATTTAATAAAGGTGATTGACCAGCAGTCTGACAGTATTCGAATCTACCAGTTGGGTAATCAATATCGCAATAAAGTGAATCACATCGGCGCCAAGGAAACGCTCAATGTGGAAGACCCTCTCATCTTTTGACGGCGCTGGAAAACCTGAAGTGAACATGAAAACCTAGGGAGGTTTTCCGGGATTTTTCGCTAATTTGGCTGTTTTTGTCAGCGGAACGTGGAATTTAAACACTTCAGAGTTGAGATTGACGCAACATCTTGTGTTATTGTGTTAGTTAATTACAAAATGTTGCG # Right flank : CGATCCTTCATAAGCACAAAATAAAACTGGATAGGTTACACTTAATTGGACAAATCCTCTAAGGTCTACTAGATTAGATGGAATCATCCAATTTTAAGGGATCGAGATATCATGACTGAAATCAAACGTCCACGAAGAAGGTTCACAGCCGAATTTAAGAACAGCTTGTGCAACTGTATGCGTCTGGAAAGTCGAGAGTGGAAATCATCCGTGAATATGAACTGACGCCATCTGCTTTTGATAAATGGGTTCGTCAATACCAAACAAGTGGCGCATTCACCGAGAAAGAAAATCGCACGCCTGAATAAGAAGAGCTGATCCGCCTACGAAAAGAAAACCAGAAACTTGCCATGCAAAAGTGAATTGAATACTTCTTTTATGGAGCAGCTTTTTAATTGGAGGGAATATGATGGGATCTAATCATAAAAATCTTGGCAGAAGTAGGAATGCCAGCAATAATTTCGATACTACGAATGGTGGTTTTTTATGGAAGGTAACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 40278-41029 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================== ================== 40278 32 100.0 34 ................................ AAGGGCGCGTCGACCGGCTTGCGTATACGTAATT 40344 32 100.0 33 ................................ GCAGCAAATCCGTAATCGTGCCGAGCGTTTCCG 40409 32 100.0 36 ................................ CAGAACGACCAAAACGTATCAAAGTTACCGCTTGAT 40477 32 100.0 35 ................................ GTTGTACTTACTTTTAGTTTGGGTAACGTAAATTT 40544 32 100.0 34 ................................ TCTACGTCCGCCATGTTGCCATGGATCAGGCTGA 40610 32 100.0 35 ................................ TTGCATATCAAGCGCTAGTATTAATACGTCTGCTT 40677 32 100.0 35 ................................ GCCTTCGTTTACTACTTTAATTGGTTTTGTGTCTG 40744 32 100.0 34 ................................ TTTGCGTAGCTTATACACGTCATGGTACGAGTGA 40810 32 100.0 36 ................................ GACACTTTTTGGGCGTACTGGAACGGTCAACGTGGC 40878 32 84.4 88 .............C....A...C.......TC TTTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAAC 40998 31 78.1 0 ............T........AC..-...TCA | T [41009] ========== ====== ====== ====== ================================ ======================================================================================== ================== 11 32 96.6 40 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGAGTTCAAATCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACAATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCTTTAAATATGTGTTAATATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCGTTTTCGGTTGTTTGTTTTCCATAAAATGGGTGAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTGCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACTGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.43, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 54505-54936 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54505 32 100.0 35 ................................ CGCCAACTGTAATGATTATCATTGTGGATAGCCGC 54572 32 100.0 35 ................................ ACGACCTGTTAGCTCAAGGTCGTTTTTATTATCTC 54639 32 100.0 34 ................................ TCTTTTTCCCAAGCCTTAACTCTCGTTGAAAGCT 54705 32 100.0 34 ................................ ACCCAATTCGGTCTGTCCTGCGGCAGCCATATTT 54771 32 100.0 35 ................................ GAGATCACTTTATGTAAAGCGTAAATTTCTTCGTA 54838 32 100.0 35 ................................ TCGCAATACGATTCGATAAGAGCGCTCGCCAAAGC 54905 32 78.1 0 ..........AT..........C.CA.A..C. | ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : ACATCTGCGATAAATATTTTTGAGAAGATATTACAAAACGGAGGTGTTTTATTTTGGATAAGATTTTAGATCACCAAGATAAGATTTCGGATCATAATCGCGAAGATTATGAATGCCTTCTATTTGTTGTTGTGATATGTTCTGCAATAACATTCAGGAAAATAAAGAAATTGGAACGATACAAAGCTAAATTAAAGAAACAACTTTATATTTAATAGAAAGTATCTAAGGTCGACCGTCTCGGCAATAACTATAAAACGAAAGTCGAACATATTGGCGCCAAACCGACACTCGAATTAGAAGATCTGCTCATCTTTTCAGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACACACTAAAATGTGTGTGAATATGTATGAAAATGTAATAATATGATCTTGTTGGGTGTGCTATGATAGGAATTAGAAGCGAAATCATTCGTTTGCAGTTGTTTATTTCTAGAAAATGGATAATATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTAGCAAGAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACACAAGTTGCTGGGAGCACAAAAGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 107990-108483 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 107990 32 100.0 33 ................................ ACGCCTTTGCGACCAACGGCACCAAGCAGGGTG 108055 32 100.0 34 ................................ ATTAATCTTTGTATTTATGGCTTGATGCGGCGAC 108121 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 108187 32 100.0 35 ................................ CTTTTTCAATTTCGTAAATCCTGGCTAGTCCAAAA 108254 32 100.0 34 ................................ CTCATTATTTTGCTTTTCCATCCATTCTGCCTGG 108320 32 100.0 34 ................................ CCGTGGCAGTGCGCGCAAATGAAATGCGGCCGTG 108386 32 100.0 34 ................................ TTAACACCCATGCGTATCACCTCAATACCCATTA 108452 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATGGGCATTCCAATCATCGCGATTCAAATATTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCAATGCTGAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGGAAACGCGAATTTATGAATGGAAGTTAGATTTGCGGAATTGGCGATTGCTTGTAAAGAAAGGCATCGATTTTTAATCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCTAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGACACGAAAATGCCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTATTGATTTAAAAAAGGTACATTAACTTCGCCCGCAGTTTTAGCAAAATTTGGCGAGGATAAAATGGCAACGATGGCTGACAGTTCATCCTACTATTTGCTCGAACGGGCCAACGCCCGTTTCTGAAAGATAGTGTTAACAACAAGGGAACATGCTATAATTGAAGCACAATAGCATAACGGTTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGCGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCCTTGCAGGGAACCGTGCTATTGTTTGACTGAAGGTGTACCAGCACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 120035-120798 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 120035 32 100.0 35 ................................ GAGCGGTGTAAAATGAAGGCTTTTGGAGGGAGGTG 120102 32 100.0 35 ................................ TTGTTGATTTTGATCCACAAGCTAACAGCACAAAC 120169 32 100.0 32 ................................ CTTAAATCCCGCCGTTTTTCGTACCCTGCCGG 120233 32 100.0 36 ................................ GAGCGTATTGAGAGAAGAGTTAAATAGGACGGAATC 120301 32 100.0 33 ................................ CATTGAGGCGATCAACAATTCTCTGTCCTCTTC 120366 32 100.0 33 ................................ CAACAAAAGCGGATTTGTTGCTGGGAGACCCAG 120431 32 93.8 34 ..........TA.................... TCAGGAATTTGGGCTACCCACAGCTTTGCCCCTA 120497 32 100.0 36 ................................ GAAAGAACGATAACTTCATGTGTTCCAAACAGCAAC 120565 32 93.8 36 ..........TA.................... ATCTATACCAGCTCCTTTTCAATGACAGCCAATGCC 120633 32 100.0 36 ................................ TTTGCTCTTTGGTAATGAACTTCCATACCTTGCAAA 120701 32 93.8 34 ..........TA.................... TTTGAACTGGTCGGGTGTCCAGAAGTTCATTTGC 120767 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.2 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTGTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTGTATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCGACATGAATCCGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 127737-128497 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 127737 32 100.0 33 ................................ TGTAATTTAAGACGTTGGTCAATTTTAATTATG 127802 32 100.0 33 ................................ TTGTGTGTTCATAGGGTTTTCACCACCGTTTGT 127867 32 100.0 33 ................................ GCGGATGTTTTGTCGCTGATGTAAATGCCGAGG 127932 32 100.0 36 ................................ AAAAACTTATCAGAACCAGGAATGAAAGCGGATGGC 128000 32 100.0 36 ................................ CTTCATAGTTCACATTAAAATATAGGTAAACGTTAG 128068 32 100.0 35 ................................ TACTAGTGGTTATCGCGGAGTTTCAAAACTAGGGA 128135 32 100.0 36 ................................ AATCAAGCAATGCAAGCTAGTGCAAAAGGAGCAAAA 128203 32 100.0 33 ................................ ATAATAAACGTAAGGATGATTTAGAAAGATAAG 128268 32 100.0 34 ................................ CACTATCACGGTGCCAAAATACAAATACATTGGT 128334 32 100.0 33 ................................ ACAGCTCCTTTTTGGTTCAAATAACCTTCAAAT 128399 32 93.8 34 ..A........................A.... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC G [128411] 128466 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGGCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTATTTCATGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAACCTAAATATGAAATAATATGTGTAATATTGTTTAAATGTCGTTTGTGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : TCCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGGAAAACTCCTGGCTCTGTCTGCTCTTTTTAAGAAAGTACAAACTCCCTTGGATTTGCTAAATCATGATTAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTCGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 184785-185016 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQS01000001.1 Alkalihalobacillus clausii strain J32TS2 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 184785 32 100.0 35 ................................ GCTAAGGCCGTGCAAGTTCTGGTCTTTACGGATGT 184852 32 100.0 33 ................................ TTTATGAGGTAGTTGCGGATAGTATTTTAAAAC 184917 32 96.9 35 ......T......................... TATTAAGTCTGCAATAGGATGGTCTTTTTCCCTAC 184984 32 93.8 0 ..............................TC | A [185010] ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTTTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCACACATGAAATCCCAGGGAGGTTCGCACCAAAATCCACTTTTAATATGTAATAATGTGTGTAAAAATGGATTAATGTGAGCGGAGCCGCATGTTAAAATAGGAGAGAAAAACGAAATTCGCGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTATTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATAACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCTGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGAGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //