Array 1 86149-87063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000011.1 Atlanticothrix silvestris CENA357 scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 86149 36 100.0 46 .................................... ACTAAAATAACCCCAATCCATAGGATATTCATATTCTGACCAGTAA 86231 36 100.0 36 .................................... ACTAAAATAACCTTTTGATATTTCTCCCTTTCCTTT 86303 36 100.0 36 .................................... ATCGACCGCGCGAATATCTTGCGAGCGAATGGCTCC 86375 36 100.0 35 .................................... ACTATATAAAAGTTGGTAGGAAATGAAAAAAATGA 86446 36 100.0 37 .................................... CCACTGGGATTAACAAACCAATGGTTATGCTTGGGGG 86519 36 100.0 34 .................................... CTGAAGTGACCATTTTCATCAATTGCTGATTCAG 86589 36 100.0 35 .................................... CAGACAGGATGGGGCATAAAAAACTCTACATTCCA 86660 36 100.0 36 .................................... CTTGCTGACAGAGTTAGTTGCAATAGAATCTCTCGA 86732 36 100.0 39 .................................... CTTTAAGAGGTGCAAAATCTTTTGCTCTAGGTAATTTAG 86807 36 100.0 43 .................................... CAAAATACAACCATACACGTGCATTAGAGAACGAAATCGGTAA 86886 36 100.0 36 .................................... CAAAATACAACCCAATGATAATTTAAATGATATTAA 86958 36 100.0 34 .................................... CTAAGTTTTCAGACGCAATAGCTAATGAAGAAGT 87028 36 97.2 0 ........................T........... | ========== ====== ====== ====== ==================================== ============================================== ================== 13 36 99.8 37 GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAA # Left flank : GGTTCCTTGGTGGCGCGGCAACAATAGTAGAGTAAGGTATGAATAAATTAGATATTAAGCTGAGACTGATGAGTGATGTCTGGAGACCGGCCACTTTGTGTCTGCGCTTCATGATTTAAAACTCTTTCTAATCCTGATGTCAACTTGTAGACGGTAGCATCCAGCAAATGTTCATCACAAGGGTATTTCAGACAATAAAGGCTAAATATCTGCCAGATTTAGACTTTAGTTGTATTTTTTGCCTAAGCCTAGCGTCAACCAGTAGGTGTTTTACAGCAAGGATGAAATTTTGCGTTCCAAAAGCTTACCCCTTCTGGTTTTGCATCTCTTACACCAAAATTTAGGTTGACGCAAATACGCTAAACCTTGCTATGTAAGCTTTTGAGGTGATTTCATAAATGTCACTCTTGACAACCCAATGTCTAAAAAGCTATTTTGATTTGAGGTTGACGCAACTGCACCTTGAAAACCAAATATATCAATGCTTTGGACTCCGGGCT # Right flank : ACCGCAAAAAAGAAGCTAAAAAACGCAAATAATCTCTCAAAACATCATTTCTCTGTGTACTCTGCGTCCTCTGTGGTTCGTTTTTCCGTTACTTCTGCGTAGAATGCCTGAGAGGGGCGGCGCTAGCCAAGGGGTAGATATATTGCAGCTTCACAAAGAAACGGTATAAGATAATTTACCTCGCAGCTAAGCTACAGGGTAAAATTTCGCAAGCTGCCTTGAATCGAGATTATGAAAACAGCCACAGAATTGCAAGCTCGACTGGAACATTACTACCAGCAAATCAAGACAATTATCCTGGCACGTCAGAATCCGATTACTGGCTTGCTACCTGCAAGTACGGCGATAACTGCTCACGGTGATTATACAGATGCTTGGGTACGAGACAACGTTTACAGTATCTTAGGTGTTTGGGGTTTAGCACTGGCATACCGTAAAGTTGACGAAGACAAGGGACGCACTTATGAGCTAGAACACAGTGTCACCAAGCTGATGCGAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 2335-355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000034.1 Atlanticothrix silvestris CENA357 scaffold34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 2334 37 100.0 34 ..................................... AGGTTAACCTATAATATCTTAGATACATAAGGAA 2263 37 100.0 37 ..................................... CTTGGCTACCCTAAGTTCCTCCTGAGTACCATAATGA 2189 37 100.0 35 ..................................... AAGGTAGCCGAGGCGATCGCAGGTGCCCCAGAGGC 2117 37 100.0 33 ..................................... GCTTTATATAATGGAGATACAAAAGGAGGCACA 2047 37 100.0 34 ..................................... GATTCAGCATATTCTGGAATAGTTGGTGTAATTT 1976 37 100.0 34 ..................................... GAATTAATTACTGAAGAAAATTTACCAAACAAAA 1905 37 100.0 34 ..................................... ACTATCGGTACCAAAATTCCAATCATATCTAGGA 1834 37 100.0 34 ..................................... ACAGCAGATAACTTTAACGATGCTGCTACTATTA 1763 37 100.0 32 ..................................... TTAATTTAAGGAGATTATCGTGAAACAATTAT 1694 37 100.0 34 ..................................... ACTATCTTTTGAGCTAAAGTAATGTGAGATTTAG 1623 37 100.0 34 ..................................... CCTACAGTCCTACCAGTTACCAGATTTCGACCGC 1552 37 100.0 35 ..................................... CCGGGATATGTAGAGATCCCCTCGCTGGCTCTTAA 1480 37 100.0 33 ..................................... ACTTGTATGCGTACCCCTAAAATATTCCTAATC 1410 37 100.0 35 ..................................... ACTGTGAGATTAACATCAACGTGGAAATTTCCTGA 1338 37 100.0 36 ..................................... CTGGTGTATTTGGTAATTTAATTTATGCAGAATATG 1265 37 100.0 45 ..................................... GATTACAAAGGCATTCGCAGCTAAAAGCGTAGTAGTTATTGAAGT 1183 37 100.0 36 ..................................... GATTACAAAGACAATCTGAAATGTCTGGGGCTTTAG 1110 37 100.0 33 ..................................... TCTAGCTCTGACGATGGCTATATAGATGACCAA 1040 37 100.0 33 ..................................... TTTCAACAGGAAAACGCAGCTTTGCCATTTCAA 970 37 100.0 37 ..................................... GAACTTAGTTTCTTAAAAGAGTACTCAGGTAGCTTAC 896 37 100.0 36 ..................................... CCTACAAAACTATGGGCGTAAAGGAGAAATGTTAGG 823 37 100.0 35 ..................................... AAAGACATTGAATGGAAGACTAATGATTGTCACGG 751 37 100.0 34 ..................................... AGTGAGCTGGCGCACCGCTAGACACAACAGAAAA 680 37 100.0 34 ..................................... ATAGTATTTCTACATACGTAAAAGTAAGAAAAAG 609 37 100.0 34 ..................................... AGTACGGAGAGAAAGCGAGAAGAACTAAGTAAGG 538 37 100.0 36 ..................................... GGGGAAATCACCAATTATTTCTTACTGATTCAGATG 465 37 100.0 37 ..................................... AGAAATTTAGAGAAGACTTTAATGGCACTTCTTTAAA 391 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 28 37 100.0 35 GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CAGAAGACAAACGCCGCACGAAAATTCATAAAATTCTTAAATCTTACGGACAGTGGATGCAGTATTCGGTGTTTGAGTGCGACCTGACACAGACTCAGTATGCTAAACTGCGATCGCGCTTGTCTAAATTAATCAAGCCAGACCAAGACAGCATCCGTTTTTATTTCCTCTGCGCTTGCTGTGAAGGCAAAATTGAGCGCATCGGCGGCGAAATGCCAATCGATACCACAGTGTTTTTTGCCTAAGTTTAGCGTCAACCAGTAGGTGTTTTACTGATAGGGTCAATTTTTTTGGCTCAAAAGCTTATCTTCTCTGGCTTTGAAGCCTGTAGCACTGGTATTGAGGTTGACGCAAACTTACTAACCCCTGCTGTACAAGCTTTTGGGCTTATTAACTAAATATTACTCTTGACAACCCACTGCCTGAAAAGCTACCTTGATTTGAGATTGACGCAACAGCACCTTGAAAACCAAATATATCAATGCTTTCAACTCCGGGTT # Right flank : CGGTGCAGTAGGTGTGCCAGTGAAAGTAGGACTCACGTTCCAATTAACTAATACCAATTCACGAAAAATTTGATTCAAATAAAGCATCAAGAATAAAATCCCAACCTGTAATAGAAGCAACGATTGATGTGTTTAATTTTTCCAAACGCCTCCAGATAAATTGTCTTAACTCATCTAAAGTTCCAAAGCTTTCCCAAGCTAAATGCCTTTTAATTTCCTCCCATAATCGCTCAATTGGATTAACTTGGGGTGTGTGTGGAGGTTGAAATAATAAAATGATATTTTCTGGTATTTGAAGATGCTGGCTAAAATGAAAAGCTCCATTATCTAACTGAATAATATGGATATCTTGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 8508-7111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000045.1 Atlanticothrix silvestris CENA357 scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8507 37 100.0 34 ..................................... AATGGGAAAATAATGTATCTACATCGAGCCGTGG 8436 37 100.0 35 ..................................... AGGGAAATTCTGAGAATAAAAAGTTTTAAGTTCAT 8364 37 100.0 35 ..................................... CTGGGGTTTTCTGTTGGATATTGGATTTACACGTA 8292 37 100.0 31 ..................................... AAGATTGCTATTGTAAGTGGTTGTGATACTA 8224 37 100.0 36 ..................................... TTTAGGGTGGACATCAAGTGGTTAGCGGAACCCGAA 8151 37 100.0 35 ..................................... TAATACACTAATTGATATCCTCACCAACTCAATTG 8079 37 100.0 33 ..................................... AAGCAGGATCTTCGCGTGTATCGGAAGCACTAA 8009 37 100.0 34 ..................................... CTGTTCTAAACAAAGTAAAAAAAGTTAAATTCCT 7938 37 100.0 35 ..................................... ATTTAGGGAATGATTCACCAAACTCTAACTCATAT 7866 37 100.0 34 ..................................... AGACAAAGTAGTAGTAGTAACTAAAGATTCTATA 7795 37 100.0 35 ..................................... TCGCGGTATCTTCATGAGGTAACAGAAACTCTACA 7723 37 100.0 38 ..................................... AACCTTTTTACCCCACATTAGTGTGCAAGCCGGGTAGC 7648 37 100.0 35 ..................................... CAAATCGTATAATCAAACCCATGAATATCCAAGAC 7576 37 100.0 37 ..................................... CAAGGTTTTAGGTTGACCTATATTTCTAGAATGATAA 7502 37 100.0 35 ..................................... CGATCACGGTACCCCTACCACTTCCGGGGGCTTTT 7430 37 100.0 35 ..................................... TATTTCATTGCCAATTTGCTATTTCAGAAATTAGC 7358 37 100.0 35 ..................................... TAACTGTGGATTTCTCATTTTTTTTGTTTGTTCAG 7286 37 100.0 31 ..................................... GACTCCGGGGGCTTATTATCAGGCGTTTTAG 7218 37 100.0 34 ..................................... CTCGACAATATCAAACAATCGAATGAAGCCAATT 7147 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 100.0 35 GCTGAAATCATCTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAGGTGGTAGTTTTTCTTTTTCCCACTCAAGCAAATTTCTGATTCATACTCTTGACAAAATCTCTAAGAGATCGAATGAATCAGCCCTGGGGGGTGTGGGGGGGCTACCACCGCAATCCTAAATTCATTACAAGACTTACAATCATCTTGGTTGATTCCTGTGGCTAGGGGTTGATCATGGAGCGATCGCTGCAACGGAACTGCGATCGCTTCTCATAAATATAGATTATGAGTACTGCATTTGTTTGCGTCAACTTGTAGATGTTTGGCAAAATAGGTGAAATTTTGTGCCCGAAAAGCTTAGTATATCTGCCTTTGAAAGCTATTTAACTAAAACTTAGGTTGACGCAAGCGTACCCAATCCTTACAGCGGCTGCTTTTGAGCTAATTTTTTTAATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACTTTAATTCCAGGTTGATGAAACAGCACCTTGAAAACCAAATCTATCAAGCCTTCCAAGTCTCGGCG # Right flank : AGCTTATAAAGCTCAACTCTTACTCTTTGCGTCTCTGCGTGATACAAATTCATATTTCCACTCAGCAACGTCAGAAATTTAAACACGGCCATGTGGTTCTAAGAGATATGTTATGTCCGGCCCAGCAGGAATAATACCACTTGGATTCAGCGGAAACAAGCTGCCATAGTAATCATGCTTCACGCTTTCTAAATCACAAGTATCAGCAACACCTTTTAACTGATACATATCACGCAGATAGGCTCCCAAATTCTGATAGTCCTTAATTCTGCGACGGTTGCATTTAAACAAGCCGTAATATGCAATATCAAATCGGAACAACGTTGTGAATAAACGCACATCTGCAAGTGTGACACTGTTCCCACATAAGTAGCGATTCGTCTCTAATACGGTATCAATTTCATCTAGAGTAGTGAATAGTTCCTCACACGCTTGATTGTAAGCTTCTTGACTTTGGGCAAATCCGCAGCGATATACACCATTGTTTACATTTTTATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAAATCATCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 4401-6605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000054.1 Atlanticothrix silvestris CENA357 scaffold54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4401 37 100.0 34 ..................................... AACTACCAACGGCTAGAACTTGTACTCTTCAAAA 4472 37 100.0 33 ..................................... AAGTCTTTTCTGAAAAGTTTTTAGGTACTAAAA 4542 37 100.0 34 ..................................... TGCCAAATACGGGCTTCTCCTTTAGCACTGTTGA 4613 37 100.0 34 ..................................... ATGCTATTTGGTGTGAATGTGGAGCCTACTGCGG 4684 37 100.0 35 ..................................... AACTAAGACTAAGTTAGGTGAACCGTCTTTATTAG 4756 37 100.0 34 ..................................... ACTTTACTAGCAACTAATTCTTTATCAGCTTTAC 4827 37 100.0 35 ..................................... ATTCTTATCGCAGTGAGAAACAAAATTAGTAAATT 4899 37 100.0 36 ..................................... GGAGACTTTCACAGATACCGAGCTTAAAAAACGGCA 4972 37 100.0 34 ..................................... TCCTAGGGAACTTCTGAATCGCAAGAGGCAGACC 5043 37 100.0 34 ..................................... TTACGACAACCTCTACATTTACCTGACCGGACTC 5114 37 100.0 35 ..................................... TCGATTTACCCATTAGTTCGATGTCATTGATACTA 5186 37 100.0 34 ..................................... CTCTATCTGAGAACACGTACTCCAACCCCCAATA 5257 37 100.0 32 ..................................... ATAATGGCATATAGTATGTAGATGCCCAACCC 5326 37 100.0 35 ..................................... CTGGTGCTTGCTTGGCAAAAAATGTAGCCCCTCGT 5398 37 100.0 36 ..................................... CAGAAGGCCATAGGAAAACCAGACAACTCCTACAGA 5471 37 100.0 33 ..................................... TCTATAAAAGCTATGGCTACCTCAGAGATTAAG 5541 37 100.0 37 ..................................... GAGGATATTCTAATGTACCCTAAATGTCGCAAAGTAG 5615 37 100.0 35 ..................................... ATGTCTTCCCTGAAGAGGATTTAGAAGGCTCTCAT 5687 37 100.0 35 ..................................... CATAGCCAGGGATGGGTACCCAAGGGAAGACATAA 5759 37 100.0 34 ..................................... TCTGTGCCTGCCACATTGGCGCGTAATGTGAGGA 5830 37 100.0 42 ..................................... TGGATGGATGAATCACAGGATTGTCGTGAAGTCGCATGGAAA 5909 37 100.0 34 ..................................... CTCGGCACTTCTTTCAATGACAAATTAATGATCG 5980 37 100.0 33 ..................................... AAATCTTTCTTGGTGATTTGAGTAAAACTTTGA 6050 37 100.0 44 ..................................... AAAACTTCCTGCGATTGCAGCAGTCGTCAAAGAGTTTGGAGAGC 6131 37 100.0 44 ..................................... ACGGATGGGGTACCGCGACTAGTAGGAGACCCAGGGAAAGCCAG 6212 37 100.0 34 ..................................... ATTAAATTGCTGACAACTGAGGAACATCAGCCGA 6283 37 100.0 33 ..................................... TAACGGTGATTTAGGAAATATCCTAAGTATTGA 6353 37 100.0 34 ..................................... TCATTCTCCAACATTGGGATTGGAACCATACCCA 6424 37 100.0 34 ..................................... AAATCCCAAGCTGCCTACGAGCGAGTTAAAAAGC 6495 37 100.0 37 ..................................... CTCGTGGATGGACAGTAGATACAATTGCTGCACTAAA 6569 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 31 37 100.0 36 GTTGAAAAACATTAAAATCCCTATCAGGGATTGAAAC # Left flank : AGAATTACAGGTATGACTCGTTATGCATGTTTTTGGGTAGAAAACGGCGAAATCATGGCTCCCATCGAAAACTTGCGCTTTGACGAAAGCCTTTATCGCTTTTGGGGAGAAAATCTTGTGGATTTGACCACTTTTCAAGAATTCATCCCCGAAGTTGGAACTTACGAAGGTCGCCAACTTGGAGGTAGTTTAGTTCCTGGAATGTTGGTGAATGATTTCACCTATACCTTATAGTTAGTTAGGTATTAAATTGCGTCAATTAGTAGGTGTTAGCAAAAGAGAGTGCAAAATTTCCGCTGTATTGCTTGCTGCACAAAGCTTTAAGCGCCAACTCGGAAAAAACAGATTGACGCAACGGCTGTAACCCTTGTCAGGAGGCTATTTCGGTAAAGTATCATCGACACTCTTGACGACACCCAGTATTGAAATGCTACTATGGCAGCACATTGACGCAAACGAACCTTGAAAACTAAATACAGTGCGTGTTTCAACATTGGGCA # Right flank : AGATAACACTAGCAACATTACCGCACCCAGTTATACCAATTCACGAAAAATTTGATTCAAATAAAGCATCAAGAATAAAATCCCAACCTGTAATAGAAGCAACGATTGATGTGTTTAATTTTTCCAAACGCCTCCAGATAAATTGTCTTAACTCATCTAAAGTTCCAAAGCTTTCCCAAGCTAAATGCCTTTTAATTTCCTCCCATAATCGCTCAATTGGATTAACTTGGGGTGTGTGTGGAGGTTGAAATAATAAAATGATATTTTCTGGTATTTGAAGATGCTGGCTAAAATGAAAAGCTCCATTATCTAACTGAATAATATGGATATCTTGGGCATAAGTGGCAGAAAATTTTTCTAAGAAAACCTGAAAACAAGCTGCATTTAAATGAGAAAATTCCCAGATGAAATACTCACCCGTTAACGGTTCTACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 266-946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000056.1 Atlanticothrix silvestris CENA357 scaffold56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 266 37 100.0 35 ..................................... TACGAAAGCGGTGACTCTAAGAGCAGAATTGCATG 338 37 100.0 34 ..................................... AAGGAAAGAATAGAGAAGAAGTCATTAAAAATTC 409 37 100.0 33 ..................................... CTACTAACTAGAACAGAAGAACGTGTACTTAAC 479 37 100.0 35 ..................................... AAATTTTTGGTACTCAATCAGCTAACGCACAACAA 551 37 100.0 35 ..................................... GCTAAATCGATTAATAATTGGAGATTTGAGGGAAC 623 37 100.0 35 ..................................... CTATTAGGGCAGTTAAAGTTGACTTGGAAACTTGC 695 37 100.0 35 ..................................... TACCAGGAATCAAACCTGGGACTTACAGCACTATT 767 37 100.0 34 ..................................... GCTCTTAGTTGTGCCGCTTTTAGTTCGATTGTTG 838 37 100.0 35 ..................................... TTAGTTTTTCCGCCTGGATATCTCAAAGGACTTCT 910 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 10 37 100.0 35 GTTGAAAAACATTAAAATCCCTATCAGGGATTGAAAC # Left flank : GTATAAGCCTTGAACCACCTTTGTACTGTGGCACTTCCTCTTCCCAACACTACCGCTAAATCTTGTATTGTCCTTACCTGACCTATCTTTAGTAAATACAATGCTTGAATACGTTCTTTTCCTAATGCTGTTTTCTGTTTTTTCAGCAGTTCACGTAATTCCTCTGCCGATTCTTCTATTTTTACTTTGGTGACTCCAGCCATGAACTTCTGCTCATATTTCTGACTTAACTATTTCTATCATTTTTTTAGTGAAATGGTATTAGG # Right flank : CCCGCAGTTTGTGTGAATTCAAGTTGAAAAAATGTTTGGTATACGTCTAGTGGAACTGATAGGTATAGAATACGCTCTGGTTGAGTGGCTGACAATGCAAGGCGATAACTCAGGAACTGCCCTAAAGCCGAAAAAGAGTCAGTAATTGCAGAGGGACTTAGGAAGCTCTTAATTTCAATGGCTATTTTTTCATCGGCTCGCTCTGCGCCAATCAATACAATATCTCTGCACCTAAATCAATCTGAAAGTTGACATTGCCAAATTTAAATCTGAGTGGATCATCTGTAATCATCCACTGCTATTTTTGAAGAGCAAGAAAGACTACTTTGTGAAAGATATCTTTTGCAGACACATAGTAAACCAAAGACATATTTCATGATAGCAGACTCAATTATTCTGTCTTATTTTCCTCAAAATATTCTGCCCGCCTGCTACCTCATCCTCATTTTCTCTTAGGTGAAGATGAATTGCGCTGTGACATGGTGTCTTGTCGCAGTTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAAAACATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 230-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000057.1 Atlanticothrix silvestris CENA357 scaffold57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ======================================== ================== 230 39 74.4 40 TTTAGTG....GTA......................... AAGGGAAAACAAAATCCCCAAGTCCGCGATTGTGCGGACT G [234] 310 39 97.4 36 G...................................... AGTAGAATATTTATCAATATGGGGAGACAGCGCACC 385 39 100.0 31 ....................................... TAGTTACACCACTTTTAATTTTTCCTTTTTC 455 39 100.0 32 ....................................... TACTTTGAAAAGGCAATAGAGATAAAGCCAAA 526 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ======================================== ================== 5 39 94.4 35 AAGTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCTTTGTACTGTGGCACTTCCTCTTCCCAACACTACCGCTAAATCTTGTATTGTCCTTACCTGACCTATCTTTAGTAAATACAATGCTTGAATACGTTCTTTTCCTAATGCTGTTTTCTGTTTTTTCAGCAGTTCACGTAATTCCTCTGCCGATTCTTCTATTTTTACTTTGGTGACTCCAGCCATGAACTTCTGCTCATATTTCTGACTTAACTATTTCTATCATTTTT # Right flank : CGGTATACCTCCTCAATATGATTAGGATTAAAATTTAAAAGGACTTCATTAGACAGATATTTCGCGAGGGTATGATGCGCGAGTCGGTAAAAAAACTCTCATAAGTTGAGGCTAGGATAACAATGTTACAAGTCCCAAATAAAATATTGACCCTAGAAGAGTTTCTCACACTACCAGAAACTCAGCCAAGCTTAGAGTACATAGACGGTCAAATTATTCAAAAACCGATGCCTCACGGGAAACATAGCACTATTCAAGGAGAACTTTGTCCTACAATCAATTCTGTTATCAAATTACAAAAAATGGGTTGGGCTTTTCCAGAATTACGTTGCACTTTTGGAGGACGTTCTATAGTTCCCGATGTCGCTGTATTCTCTTGGGCAAGGCTTCCCATAGACGAAAATGGTGATATTGCCAATACATTTGCCGCAGCACCTGACTGGATAGTCGAAATTCTTTCCCCAGAACACAGCCATACAAAAGTTACAAAAAAATCTTAC # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 78336-76327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECZB010000006.1 Atlanticothrix silvestris CENA357 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 78335 37 100.0 36 ..................................... ACAGTTGGTATTATTTCCCATATTTCAAGAATATGT 78262 37 100.0 36 ..................................... AAAATTACCAATTTTGTTACTCATACGGAATTAAGT 78189 37 100.0 33 ..................................... TGGTTCTGGTTTTGTCTCTACTAGTGGTTCAGT 78119 37 100.0 37 ..................................... GGACATGGCTACGGCACAGGTAGGCCACCAGTTACGT 78045 37 100.0 36 ..................................... TCTGAAGATACTTCAATTATTCCTAAACCATTTAGT 77972 37 100.0 34 ..................................... GAAAGCCAGCCACTCGAACTTCTTGCAGCGATTA 77901 37 100.0 35 ..................................... CAAAGAGGTAGATAGAATGTTACTAAGCACATGGA 77829 37 97.3 35 ................................A.... CCGGACAGGATGCCGTAGCAGCCCAGGAGCGATCG 77757 37 100.0 35 ..................................... TTCGCTCTATATCTGCAAAAATATCCAGTATTAGA 77685 37 100.0 38 ..................................... GGATGAATTAACCCAGCTTTCCATGCAGCCAGAATGTG 77610 37 100.0 41 ..................................... TTTCAAAATGCTTCATCAAAAGAATCATGCAATCATCAAAA 77532 37 100.0 37 ..................................... AGCTCGTGATTATGCGGCTAAAATATTTCAAATTAAA 77458 37 100.0 34 ..................................... GCTTTTCCTCCAAATATTTTACAGACCAGCCTCT 77387 37 100.0 36 ..................................... TTCTTTACTCTTAAATACTAACTTGGTTAACCTAGG 77314 37 100.0 33 ..................................... TACGAAAACGGCACAACCTCAACTAGCCCCACA 77244 37 100.0 34 ..................................... AATCACACAAAAAACCCTGCTATTTAGTGCAGGG 77173 37 100.0 41 ..................................... AACCTTGGCAGCCAATAAGGTATCTGTCTCAGCCTTTAAGT 77095 37 100.0 37 ..................................... TTTATTTCATTCATAATGCCTGTCATCTCACCTAAAA 77021 37 100.0 33 ..................................... AAAACACCTTCTCTAATCGCTTTGCGGCGTTGA 76951 37 100.0 32 ..................................... AAGTTGTCATTATCATAGCTAGGGATATTCCC 76882 37 100.0 35 ..................................... AGATAAACATGCATTATGACGAGGAGGGTTCACTT 76810 37 100.0 41 ..................................... TTTCAACCTGTTGAGCAAGTTTTTCAGGCTGCTTCAGCAGA 76732 37 100.0 34 ..................................... ATAAAGGCGATCGCATACTTTCCTAGGGCAGCGA 76661 37 100.0 39 ..................................... ACAGAAACTGGCCCATTAGGACGAAAGAAAAGATATATA 76585 37 100.0 35 ..................................... TCTGTACCCTGGTGAATGAACTCAAATGATGACCC 76513 37 100.0 35 ..................................... TAGCCTTGCCCAACAGCAGCAACAGCAAGCCCAAG 76441 37 100.0 41 ..................................... CGTTTTAGGTACGCTCAGTTATTCCTGAATGGTCGTCAAAG 76363 37 94.6 0 ........C..C......................... | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 99.7 36 GTTCCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Left flank : TGCCAAATCCACCTCTACCTAAAACTCGCAATATTTCATAGCGATCGCGAAACAGCTGCTTAGAGCCACACATTCTAATAAGCTGATTCTGCTCTAAGCCATACTCATAAACATTCGGAGTTTTCCCAGTAAAACGATTCATTAGTCAAGGAAAGCTACTTTACAGTGTCTTCAATTTAACTATATATATTATTTTACGCTAGTATTATTACGGTATCTTTGCAAAATCATCACAAGTGCTGCATTTGCGTCAACCAGTAGGTGTTTGGCAAAACAGGCGAAATTTTGTGCCTAAAAAGCTTAGTCTATCTGCCTTTAAAGGCTATTTCACTACAACTTAGGTTGACGCAAGCGTACCAAATCCTTATAGTGACTGCTTTTGAGCTACTTTTTTCAATGTTACTCTTGACAACCGAATGGCTAAAAAGCTACTTTAGTTCCAGGTTGACGAAACAGCACCTTGAAAACCAAATACATCAATGCTTCCGACTCCGGGGTGT # Right flank : GTGAATGAGCAAACATGAAAGCACTACAACGAATTACATTTAACCCAGAAATCATGGGTGGCAAACCTTGCATTCGAGATATGCGTGTTACTGTAGGTATGATTGTCGGTTTAATGGCAGCAAGACATACCCCAGAAGATATTCTCAAAGCTTACCCATACCTAGAACGTGAGGATATTTATGAAGCCTTAGCTTATGCTGCATGGCGAGTAGAAGAAATTGAAGTACCTCTTGCTTCTGCATGAAAATTTTACTTGATATGAATCTTTCTCCTGACTGGGTTCCAGTCTTAGAAAATGCGGGATTTGAAGCTGTCCATTGGTCAACAATTGGTAATCCTAGTGCTATAGATAAAGTAATAATGACATGGGCGCTTACAAACGACTACATTGTTTTCACCCATGACTTAGATTTTGGTACACTGCTGGCAATGACTCAAGCTAATGCACCCAGCGTAATTCAAGTGCGATCGCAAGATATTTTACCAGCTAAGTTAGGTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //