Array 1 115583-116505 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWL01000006.1 Porphyromonas cangingivalis strain ATCC 700135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 115583 37 100.0 39 ..................................... TGCTCTTAGCTTGTAGAAAAGTGCAAAAGATAGGATGCT 115659 37 100.0 35 ..................................... AACTCCTTGCTACCTCTTAGGACGGTGATATGAGT 115731 37 100.0 39 ..................................... TGCTCTTAGCTTGTAGAAAAGTGCAAAAGATAGGATGCT 115807 37 100.0 36 ..................................... AGCAGACGTTTCTTTTTCTCCTCAATCGAGGTAGAT 115880 37 97.3 36 ..........................G.......... GCCGTCGGGCTTATATATCTGCATATTGTCTTATAT 115953 37 100.0 36 ..................................... CGTATTTCGAGCTTCATTCGATTGGTTTTCGATTAT 116026 37 100.0 37 ..................................... TTCAGAGCCATCGCTGTTAGTCCGCTCCCCATTTGAG 116100 37 100.0 38 ..................................... ATTTGAGTATGTAAAGTATCATGGATTTAGTTTTCTTT 116175 37 100.0 36 ..................................... ATCATTAAAGTGTTTTCTAAACCCATCTTCTTCGGT 116248 37 100.0 36 ..................................... CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTTCAA 116321 37 97.3 36 ............G........................ CCCGACCCAGCTCCGTGTCCAGCTTGTAATGTCCAA 116394 37 94.6 38 ............G.......................T CTCTATCGAGGTGGCTCTGTAATGCTCTCCCTTGTGAT 116469 37 78.4 0 AC.CT......................AC..C...G. | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 97.5 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : GATTCGTTTTCGACCTTCCTACGACTTTATTTTGCCCCTCTTTACACGTGGCTCAGGGGGCGAATGAAGCTACTCGGATGTGACCCGAAATCCTGAATCTGTTTTCGAAACTTTTTTGATGGTCGCGATTTTCTTTTCCTTTTGAATATCAGATCATTGTGTTTTTTAGATGTGAGGTGAGATTTTCGAAAATACTTGCGGATGCTCTTATCTTCACTCTATTTTCGAAGAAATGCTGTTTTTGTTCATTCTAATCTCCTGATTATCAGTGGTGCTCTGCTGTCAATCTTCGAAAATTGAAAATCGTGAAAATTCCTCTCCGAATTTTCGAAAAATGAAATTCTTTATATATCTTTGTCTCGCAGTGGATTAAATAGAGGTTGTGACCACATGATGTTCACGTAGGAGCATCTCCGAATAGCGATTTTCGAAGAAATAATGACTGCTGATTTTCAGCGTGTTAAGAAAAGGTTTCTATTCAAGTTGCTGATAATCAATCT # Right flank : CTTTTGAATTATTTGTCGTATCTTTGCAGTGAAGAGGTGTGAGCCTCTCCGGTGAGATGTCCGTAAGACATCGCGCCCCAGAGGAGATGAGAAGTTGTCTCCTCTTACTTATTTATATCCACTCATTGATCGAGATCATGGGGGACACTGCTTATAGCATGGTTATAAGATAGGGCGTTGCCCTTTTTCGAAATATGATCGGAAAGAAGACAAACAAGACCGCCCCCGAAAAGTCGAATGAGACTTTTCGGGGGCGGTCTTGTTTGTCTGGTGTGCCGTATGGCCGTCTTAGGGTGTGGTCACACTTCGGGCTCGATGTTGCCCGAAGCGACATAGGTGCGCCATTTCTCGATCAAGGCTACCATGTCGGAAGGAAGGGGGGCTTCGAAGGTCATTTCTTCCTTCAATATGGGGTGATAGAAGCCGAGGGTCTTGGCGTGGAGGGCTTGTCGGGGGCAGAGGGCGAAGCTGTTTTCGACAAACTTCGTGTACTTGCTGAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 36372-37655 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWL01000003.1 Porphyromonas cangingivalis strain ATCC 700135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 36372 36 97.3 37 ....................-................ CTTCTTCCTCCGCCTGCGTGGATTTTAGATTGCTTCG 36445 36 97.3 38 ....................-................ CTTGGCTTGTGCCGTTGTTATGCGTAAGGCAACGGCCA 36519 37 100.0 39 ..................................... AAAACTCTAAACGTAATTACGGCAATCGTAATATAGTCC 36595 37 100.0 38 ..................................... AAGTAACGGAATAATCCCCCAATCGGTCAACCTAATGA 36670 37 100.0 36 ..................................... TCTTTCCCAAAAGAATTTGAAACAAGAGACTCTAGA 36743 37 100.0 38 ..................................... TCGTATATTATTAGTGCGGAGTAGTTGGTCACTATGGG 36818 37 97.3 36 ............G........................ CGAAATGCTCCTTGCCCTATGATAATGCTTTCTGCT 36891 37 100.0 39 ..................................... TCCGCTATGTTTACCATTTTCATCATCCCAGCATAGAAC 36967 37 100.0 37 ..................................... TCATATTGTTGCATAAATTGTTTAATAGACTTAAACT 37041 37 97.3 36 .......................G............. TTTATAGGAGTTCTCTATTGATCTTGTCGACTCGTT 37114 36 97.3 35 ....................-................ TCAGCTACGAGATACCACCCACCCTTTCGACCTTC 37185 37 97.3 35 ....A................................ TTGTTGATTGTAGACCATTTAGCCAATTCAGGAAA 37257 37 100.0 34 ..................................... GTGATCACAGTCCATAGTCGCCTGTCGTATCGTG 37328 37 97.3 35 .......C............................. GCTTCCGAGGATAGGAAGTTCTCCTTTACTTCTTG 37400 37 97.3 36 .......C............................. CCTGCCAGGGCTGTCGAGGTCATACCCAGCTCTTCT 37473 37 100.0 35 ..................................... CGCAGTGCCCGACACGATATTGATGCTCAACTGTG 37545 37 97.3 37 ...................................G. CGATAGCGGTATCTCCAAAATGTCTCAGCCCCGAACC 37619 37 83.8 0 ...........................TGGC..C.G. | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.7 37 CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Left flank : GCCGATGAAGCCATCTTAGGCACAGGGTATCCCTCTCTTGTGTCTGTACCCTACTAAGCGACCCGACATTCATCACCTTTGTTTGCTCTTGGAGTGGATTTCATTTTCGAAAAAAATGACTGTGTTGAGATTCACTTTTTGCTGTCTATCAGGATGTTATCGAAAATATAGTTTTGTGTCTATTTTCGAAAATCGCAGCAGTCGAACTGATAGAGGATCGATTTTCGAAGAAATGCGACTTTGTCGATTTGTAACCGCCTGATAATCAATAGTACATAATGAGCGTTTTTCGAAAATCGAAATAATTGATTTTTATTGTTTGGTTTTTCGAAAAATCAAAATCTTTATATATCTTTGCCGTACAGCAATTTGAGGGCTGCTTTTGGCCTCAAAGTGTTCATGCAGATACATTCAAAGAGGGCGATTTTCGAAGAAATAATCACTGCTGATTATCAACTAATTACAAAAGAGGTCTTCAGTAAGTTTCTGAAAATCAATCT # Right flank : CATAGCGATGAAGCTCGATTGATCAATATATACTTGAATAGATAGGGAGAGTCACTAAAAAAGTCGTTAAAGGCGATGAATCGTCTTTAACGACTTTCGTTATCAAGTCTAACGACTTTTTTTGTCGCTTCCTATGATCTTTTTCTCGTCAAGAGGGTCTGGTCTCGATATGGCTGTCTATCAGGTGTTTCTCGATGAATTGCTGTTGCTCTCCGTTGATTGTGCATTTGCACTCTTCGGGAAAGGTTGATGAGTCCGGATTGTGTCATTTTGTCTTATTGCATTTATTCTTCCAAAGACTCTGAAATGTCATTAAATATTTTTATCTTTGTTTAACTCGCCTCGCCGGGTTTTATAGCCAAAGGCTCCTTGAAGAGGATGTCACTCCAAAGGGTTTCGGCAGGAGGGGAAGAAGGTGTCGCTCTCAGATTTATACTTATGAATAACAACAAGCCGTACAGCAGACATATCTTCATCTTCCCATTTCAATGGGACTATAT # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCTATACATATTCAGTCATTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 48690-49386 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUWL01000003.1 Porphyromonas cangingivalis strain ATCC 700135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 48690 37 100.0 34 ..................................... ACTGAGCAACAATGCTTGTCTGCAAAGTCGTTGG 48761 37 100.0 36 ..................................... TCTTTTTCCTCTCCCTTAGGACGAGTGCAAAGCTGA 48834 37 100.0 33 ..................................... CCTTTCCCTTTCCCTTTTTCTCATGAGGAAGGA 48904 37 100.0 40 ..................................... GCTATCATCTCTCGACTTTTTTGTAGGCCTTCTACAATTG 48981 37 100.0 38 ..................................... AAAGTGAACGTTGATTCCCCCTCCTTTAGGGACTTTGT 49056 37 100.0 34 ..................................... TATCATTGGGACGATCGGCATACCAAGATTCTAT 49127 37 100.0 39 ..................................... TCCAAGAGTAGTGGAAGAAGGAAGAGGTAATAAGTCCCC 49203 37 100.0 37 ..................................... TCAAAAGGAGGAGGAACTTGAGGAGCTTCTCCTAAAA 49277 37 100.0 35 ..................................... TGATACAGCCACTCGGAAGAGGTAAACAAATTTTT 49349 37 91.9 0 ........................G........G..T | A [49380] ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 99.2 36 GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Left flank : AAAAGGAGAACTAAAATCATATAGAGAGTATAGTATGCTCAAAAAAGCTCCCATTCCGTAAAATCTGACAACCTTACCGAAGAGGTCTCGATAACAAGAACATTTTCGAAAAAAACAACCTTGTCAAAAGTTGCTATACATCTATTGATGAGTTACTTATGGAAATGCTTAAATTTCTCTGTTTTCGAAAATCGCATCAAGCAGACTTCCCCGAACCCGATTTTCGAAAAAATAGACTTTTCTCAAAGTATAACCCGCTGATTATCAACTATCATTTTATCGATTTTTCGAAAATGTCATTTTGATGGATTTTTCCACATAGATTTTCGAAATTTCAACATAATTGTATATCTTTGTCTCTCAAGGAAGTACCCCTTGATCAAGTGAGGATAGTGTACACATAGAAACAGTTTAGAAGGGGGATTTTCGAAAAAACATAAATGATTCACAGAAAAGACTTTATAAAAAGAGTGTTTTCGTAAATCACTGGTAATCAAATT # Right flank : TGCAGGTTGAGCAGAGAGAGAGGGAAATATCTTTTCGAAATCGCTTATATCCATCGTTTTATTATTATTTTGTTTTATATTTGCGGTGTGGAGGAGCGAGACCTCTACGGTGAGATGTCCGCAAGGCATCGCGCCCCCTATCGGAGGAGATGAGTCATCATCTCCTCTTGTCATTTATGCCCACCCTTATTTTGTCGGTATCATACCGGAACAAAGGCTTTTTGTCTCTTATGACTGTTACGACTATCTATCCATATCCATCGTGAAGACAGTCAAGTCCTCGTATGTGCTTTCAGACGGTATCGGGAAGTAGAAAAAAAGTCGTTAAAGACGATCAATCGTCTTTAACGACTTTCGTCATCAAGTCTAACGACTTTTTTTGTCGCGTCCTATGATCTTTTGTATTGGGGGGGGAGGTGGAGGAGATGGGGGCGGAGGCTTGATTTTCGCAAGTCGGGTAGAAGTCGTATTTTTGTACCTATATTTATATTAGGTAATGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACAAAGACAGTCAGTAAGACTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //