Array 1 2563-2230 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL370870.1 Corynebacterium vitaeruminis Ga6A13 T532DRAFT_scaffold00033.33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2562 28 100.0 33 ............................ GTTGATGCCCGCGTCCGCGAGGTCATGGAGCTT 2501 28 100.0 33 ............................ CCTGGCCTGGCCATCGGTAAACCGCCACGGTTC 2440 28 100.0 33 ............................ CTACGCGGTAGCGGCCTACGGGTCGCTTCCGGC 2379 28 100.0 33 ............................ CTGATCGTCGGAGGCGATTTCACCGGTGCGCTG 2318 28 100.0 33 ............................ CCGTCGAGCGTAGCTGCGCGACCACACTGGCTT 2257 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTGCGCCCCGCACCTGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAG # Right flank : GGCACGAATGCCGCGCCTTCCGGATCACGCTCAGTGCGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5843-3558 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL370870.1 Corynebacterium vitaeruminis Ga6A13 T532DRAFT_scaffold00033.33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5842 28 100.0 33 ............................ GCCCGAGCGCAAGCAACGTATTGGCGTGGCCGA 5781 28 100.0 33 ............................ CCTCCCGCCCACACATGGCCGCGCCTTTACCCT 5720 28 100.0 33 ............................ TCGGGCGATGCCCTCGGCATGTTCGCCAAGGAG 5659 28 100.0 33 ............................ CTCGGCCGAGGTCGAGGTGAGATCTCGGGCGTT 5598 28 100.0 33 ............................ CGGCATCATCGGGGCGATCTCCAACCTCATCGG 5537 28 100.0 33 ............................ GCCGACGCGATCAAGGGGTTCGCCAGCGATGCG 5476 28 100.0 33 ............................ GATCGGCGCCACTCCCGACGGCGATGCCGCTCT 5415 28 100.0 33 ............................ GGGGTGCCCCTCAAGCAACGCCATGGCCTTTTT 5354 28 100.0 33 ............................ GCGCACGGCCCAATTGAGCGGGCCGTTGACCGG 5293 28 100.0 33 ............................ CACCGGCGACCGCGCCGATTCCGAGCGAGTTTT 5232 28 100.0 33 ............................ GAAAAGCCCCACCAAGGAGGAAAAGAAAATGAC 5171 28 100.0 33 ............................ GTCGAACCGCGGCGCCCCGGCCGGGGCGTTATT 5110 28 100.0 33 ............................ CCCCGACCGGGCCGGAAAAGCTCCCGCTCGGCG 5049 28 100.0 33 ............................ TGGGTCGCGGAAATCGTGGCCGTAGAGCAGCGG 4988 28 100.0 33 ............................ GTCAAGTCCTACATGGACGACTACGACAAGCTC 4927 28 100.0 33 ............................ CGTCGGCGACAACCAAGTCGGCGGCGGTGCGAG 4866 28 100.0 33 ............................ TCCCCCACCACGACCGCCGCGCCCACGTCGACG 4805 28 100.0 33 ............................ TGAGCGTCAAGGAGTTTTTCCCGGTGTTTTACC 4744 28 100.0 33 ............................ GGGGGCTGGACCATTGGTCGGGTGTGCCGCCCG 4683 28 100.0 33 ............................ GGACCTTCTCATGACCACAATCCGCACCATCGC 4622 28 100.0 33 ............................ CTATAGGGGGTAGTTGTTCACCTTTGTGTTGCG 4561 28 100.0 33 ............................ GTCCGGCGGTGTGGAGTCCGAAGCTCGCGCGCG 4500 28 100.0 33 ............................ CCGGCAACCTCACTACCTCGAGGAGATGGTGAG 4439 28 100.0 33 ............................ CGTGTATGGCGTCATTGCCCACTTACCGAGCAA 4378 28 100.0 33 ............................ CAAGGACGACCTCACGCCGCCCGAGCTCGGCAA 4317 28 100.0 33 ............................ CTCTGGAACGGGAAGTCCCGATACCTCCTCACC 4256 28 100.0 33 ............................ CGATCGCCGACGCCCTCGGCGTCAATGACTCCA 4195 28 100.0 33 ............................ CCAGCAGCTGCTCGACGAGATCATGCGCCGCTC 4134 28 100.0 33 ............................ CACCCCCACCGGTGCTAGGCTCGGCCGGTGGTG 4073 28 100.0 33 ............................ CAATGGCCTCGGGTGCCGGGTTGTCCGAGCTCA 4012 28 100.0 33 ............................ CCATCACCCGGCTTGGGCGGGCTATGGACAACG 3951 28 100.0 33 ............................ CCGTACGCACCGTTTACGGTAATCCCCAACGAC 3890 28 100.0 33 ............................ GGACAATGGCCACTTTACCCGAAAATGCCCCTA 3829 28 100.0 33 ............................ GTCCATGACCATCATGGTAATACCGGTTGGTAT 3768 28 100.0 33 ............................ CAGCAGGACCAGCAGAATGATTCCGGCGACTAG 3707 28 100.0 33 ............................ CGGGTTGGCGGAGATACCCCGGCGGGGCCATCC 3646 28 100.0 33 ............................ GCGACCCCAGCCACTTGACGAAAGACCCGGCGG 3585 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 100.0 33 GTGCGCCCCGCACCTGCGGGGATGAGCC # Left flank : GCGGAACTGCGACTGTGGAGCGACCTTGAGACCGTTGCGAGCGGAATCAACTGGGAGGAAGAGTGACGCGATGATGGTCTTGGTCGTGACCGCCTGTCCAGCTGGCTTACGTGGCGACCTCACGAAATGGCTGATGGAGATATCGCCAGGCGTGTTCGTCGGGCGGCCTAGCGCCCGTGTTCGCGACGCGGTGTGGGAGCGGACCTGCGACCTTGTTCGCGACGGGCGCGCGATCCTCGTCCACAACGCGGCGAATGAGCAGGGCTTCGACTTCAAAGTGCACCGAAACGACTGGGTGCCGACGGACTTCGATGGCATCAAACTCATGATTCGCCCTGACAAGAGGCAGCGCACCGCGCGCCGGACCGGATGGAGCAAAGCTCGCAGGATGCGCTGACACTCGCAGCACCTCATGAACTCCAACCTGGCGAAGGTCATTTCGGAAAAGCAAGTTGCATGTAATAGCATGAAAACGGCTCCAAAAACGCACGTCAGCAAGA # Right flank : GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 401-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKV01000057.1 Corynebacterium vitaeruminis Ga6A13 T532DRAFT_scaffold00055.55_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 400 28 100.0 33 ............................ CCGGGACCGAGCGCTACGCGACCGAGTTCATCG 339 28 96.4 33 ......A..................... CAGCATGTCCCACCACAGTCACAGGAAATGGTA 278 28 100.0 33 ............................ GTGCTGGCCCGCCCGTGTCGGCGACGTGCTGGA 217 28 100.0 33 ............................ TCGGCCCAGGGATCGGGAATTCGTTCTTGTCCC 156 28 96.4 33 .................A.......... CAGCTAGATTCACCCCCTACGCCTCCTCGCTTT 95 28 96.4 33 ........T................... CCGCGGCGCTGCGCGTCTGCAACGGCAGTCATG 34 27 96.4 0 ....................-....... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.9 33 GTGCGCCCCGCACCTGCGGGGATGAGCC # Left flank : CTGGCGTAGTAAGTACTTGGGGCGATCTTGATGCCGGCGTCTTTGAGCACGCGGCAGATAGACTCGACCCCGAAAGTGTTCTTGTACTGGGTGATGAAATCGACGATTACCGATAGGGGCGGTCGAGCTCCGCCGCGAAGAAAGCCGAGGCCTGCTTCAAAAAACTGTTGGCTCTGCGCAGTTCTGTGACTTCTCGTTCCAGTTCAGCGATGCGCTGAGAGTCAGCGGTGGTCGTGCCCAAAGCCGCGCCGCTATCGATGCGGGCTTGGTATACCCAGCCGCGGAGGGTTTCTTTGTTGATACCGAGCTGCTCAGCGATACGTCCGACTGCGCCGTTAGCGGTGGTGGGGTCTTCTTTGGCTTCGAAGACAAGGCGGACGGCGCGGTCGCGGAGCTCGTCGGGGTACTTCTTATTGGCGGGCATGGGATCTATCCTTCCGTGGTTTCGTACCCTCCATCAAACCCGGGAAGACTCACTTTCGTCCCGCCCAAGGCGCTAG # Right flank : CCTCGACC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //