Array 1 9473866-9472855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084203.1 Streptomyces sp. Go 40/10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 9473865 29 93.1 32 .........T..........C........ CTGAACGCCTCATCCCGCCGGCCCCACCGATC 9473804 29 100.0 32 ............................. ACATGCGGGGTCTGGACCCACAGTTCGTGGAC 9473743 29 86.2 32 .........A....T.T.......T.... AACGACGTCCGTAACGACACGTTCTCCTTCGA 9473682 29 96.6 32 .C........................... GAGATCGAGATCCCAGGTCAGGCGCAGAACGC 9473621 29 96.6 32 ..........T.................. ATCTCCGCGCTGGCCGCACGCCCAGAGGGATG 9473560 29 96.6 32 ......T...................... TCCGCAGCCGTGTTCCGCAACATCCTCGTCCG 9473499 29 96.6 32 ........................T.... ATCGATGACGACGTGTTCCGGTGCCATCCGCG 9473438 29 93.1 32 ........................T...A ACGGGGGCGATGATGTAGGCGACCTGCCAGGG 9473377 28 89.7 32 ........-...............T..G. AGACAGGCCGAGATCAGCCTCTGGCTCGACCG 9473317 29 93.1 39 ..................A.....T.... ACGGTCCAGGACGCCAAGCAGCGAGCTGCTGACCTGGTC 9473249 29 100.0 32 ............................. CAGATGACCAAGCTCGGCGACGCCCTCGTCGA 9473188 29 93.1 32 ...................A....T.... CGGCGCATGAAGGGCGTCGCTGACGCCTACGT 9473127 29 100.0 32 ............................. CAGATGACCAAGCTCGGCGACGCCCTCGTCGA 9473066 29 96.6 32 ........................T.... CTCTGCGAGAACGGCCGACTGACCGCCGTCGA 9473005 29 96.6 32 .............C............... TAGCCGAGCGCGATCCCGACGGCGAGCGTCGA 9472944 29 93.1 32 ..........T..........T....... AGCTTGGTGGCCACAGCCTTTGCCGTGGCCGG 9472883 29 86.2 0 .C......T...............TC... | ========== ====== ====== ====== ============================= ======================================= ================== 17 29 94.5 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : GGTCGAGCCAGCCCGCCTGATACCAATTGCTACGGTCACTTAGCAACTATTAGAGGGGGGCCATGCACTCCTGGCAACTCCGCCACATCCGCGAACGCCTGATCAACGACTTTCTCGCGGAACAGAAGCGACAGCGAGGCGAGTTCGATGAGCGCCTGGCAGACATCGACAGGCAGATCAGGGAAGCCGAAGCGGCCGAAGACCAGAACCGCAGCGACCCAATGGTCCTCGTCCGCAACAGCGTGGGCGCACCTCGTCGCGTCTACCACGACGCCGACGACCCCTGTGGACGCACCAAGCACGGCGGGCGCGAGCAGCAAGGGCAAGGATTCACGCGAATACGGGAGTCGGACGCCAAGAAATTGGATGGCGGAGCCCTCACTCGATGTACCGCCTGTTGGAGCCCCTACAACTAAACGAAGGCCCGGCCTGGGTGTTGGGCGGGGCCGCCAACGCGAAGGTGCTCCGACCCAGGCGTGGACGCCGCCGCCGGTGTAGCC # Right flank : TCGGCCTGCGCGGACTCCCGGAACCGGGCCAGGTCCTCCCCAGCCTGACGATGGCGCTGCTGCAGCAGTTCGGCAGCAGCACACTGCGCTGGTCACCCTCGCCACCCAGCACATGCAAGCGGCGTTCGCCCGACCAGCCGTTGATTCGCTCAGCGCCGCCACCCGTTTGGACCTCGCCAGTTGGCTGCGCAGGTCGTCGGCGTGGGCGACCCACAGTTGGTGGCGCCGCTTCCACAGTGCGGGCTCGGCGGGCCGCTCGTCTACGGCTCGACGGTGAGGCCGGCGGCACGGGCAGGCTCTGCAGCCCGCGTCGGCACCATTCGGCCGCCCGAGGACCGGGCGTCGCCCAGTTCACGGAGTGCCGCGTTCCGCTCGGCGACGCCGCCATATGATCGCAGGCGATGGCCAGTCGTCTACAACCCTGGGGGGCGCCTCGTGCCGCAGCTTGTCCGTGAGCAGCATGTTGATGTCTTCGTGGGCTACCACGCGTTCGCACTGCA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [10-10] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9477104-9474399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084203.1 Streptomyces sp. Go 40/10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 9477103 28 75.9 93 ......TT.C....-....A....AA... GCCCGCCGCAAAGCCGAGCAGAGGAAGGCCCGGTCTTCGCGCATGAGCGGAGATGGAGCCCACGTCCCAGAGGAGATATGGCGCCATCCTGCG G [9477093] 9476981 29 89.7 32 ......T..........A......T.... CGGGCTCCGGCCCGCTGGAGGGCGGTGACCGC 9476920 29 93.1 32 C.......................T.... GCGGCCGGCCTGCCGAAGTACCGCAGCGCCAA 9476859 29 93.1 32 ..........T..........A....... GACCAGTTCGACAATGCCCGGGAGCCGGGCGA 9476798 29 100.0 32 ............................. GTTGAGCCCAACAGGGTCACGGTCCCGTACGA 9476737 29 89.7 32 C....A..................T.... TATCCGTCCACCATGGTCCCGTCGGGTTCGGT 9476676 29 89.7 32 ..................A..C..T.... CAGCCCGTGCACAAGCGGGCCCGTTCCCTGCT 9476615 29 96.6 32 .........A................... TACCCGAACATCCCGTACACCCAGGAGTACGG 9476554 29 89.7 32 ..T....................CT.... ATCGCGAGTCGGGGTCGTAGAACCCGAAGGGC 9476493 29 100.0 31 ............................. GACACCCGGCACGCGGCCGTGAAGACTCCCG 9476433 29 96.6 32 ......T...................... TCGTCCAGCCAGTGGAGGACGAACACGCCGTC 9476372 29 93.1 33 ...G....................T.... CAGACCAACTGAACGGAGGGCCCTGCCCCGCAT 9476310 29 96.6 32 ........................T.... GCGGTCCAGCCGGCCAGGTAGGCGAGCTCGGC C [9476305] 9476248 28 96.6 32 ...........-................. CAGCAAGCCCGGTCGCAGGCCCGGGAGCTGGT T [9476226] 9476187 29 89.7 31 ..T...........T..........G... TGTGGGCGGCGTACAGTTCGTCGTCCTCGTA 9476126 29 82.8 29 ........T..............C.GA.C TCGGGGACTTCGCCGTCGTAGTAGGTCTG 9476068 29 96.6 32 ...........................G. CCGGTGGTGTTGCCGTGGGCGTACCCGCCGTT 9476007 29 93.1 32 ............A...........T.... TAGCCTTCGGCGTCCTCGGGGCCGAAGGCGAA 9475946 29 96.6 32 ..T.......................... TCCTGCTGTGTCATGTGGTGCTGTGCCTTGGA 9475885 29 96.6 32 ........................T.... CCGCGCTGCGTCTACGCCGCGTGGATCACGGA 9475824 29 96.6 32 ..T.......................... ACCGGCGCCACGGGGCAGACGACGTCCGTCAC 9475763 29 86.2 32 .........A....T.T.......T.... AACGACGTCCGTAACGACACGTTCTCCTTCGA 9475702 29 96.6 32 .C........................... TACATGCTCACCTAGCGCATGGGGCCGACCTG 9475641 29 100.0 32 ............................. TGCGAGCCGCTGTGGAAGCAGAAGGACGGCAG 9475580 29 89.7 32 .G......................T..A. ACCCTGGAGGCCATCGCGGATGCGGTTGACTC 9475519 29 86.2 31 ...A.A.............AA........ TCGTCGGTTCCTTCACGAGCCGCAGCGCAGG 9475459 29 93.1 32 ........................TC... TAGTCCGTCTCGAATCCGTAGTGGACCCGGGC 9475398 29 96.6 32 ........................T.... GCTGGCGGTCCTTGATGAGGGCCCGGTGGCGG 9475337 29 96.6 32 .C........................... ATCGCCGCAATCCCCGAGCTGATCGTGACCTG 9475276 29 100.0 32 ............................. TTGTCGGTGAAGGTCGTCATGGCGACGCCTCC 9475215 28 93.1 29 ................-.......T.... GACGCGAAGGACCCGGCGTCCCCTACCGA 9475158 29 86.2 32 .C..CT....A.................. TCCCGGCAGTAGGACTCGGGGTAGGTGCCGTA GG [9475154] 9475095 29 96.6 32 ........................T.... TACCTCGGCGACATGATGGACCAGTTCGGGAT 9475034 29 96.6 32 ........................T.... ACGGGCGTGGTCGACTCGGTCAACCTGGTCGC 9474973 29 100.0 32 ............................. ACGGACTCCTGGGTGCGGTTGTCGCGGATCCG 9474912 29 93.1 32 A.......................T.... ATCTACCGGCAGGAGGCTCTGATCCGGGCCGA 9474851 29 89.7 32 ...T........A...........T.... TTCCTCGCGGGCACCAACAGCTGGAGCGCGAG 9474790 29 93.1 31 ....................A...T.... CTCACCCTCTGGTACGCGCAGACCAACAGCT 9474730 29 96.6 32 ........................A.... CGGACCTGCCGGATGATGTCGTACGGCCAGCG 9474669 29 93.1 32 .....................A......A GACGGCGCCACCCCGGCCGCGCTGCAGCGCGC 9474608 28 93.1 31 .....................-..T.... GTGCGCTTGCGGACTCGGGGCCGGGCCCCTG 9474549 29 93.1 32 .C......................T.... TCGGAGTCCGCGAACATCTGGTAGGGCTCGGT 9474488 29 93.1 32 .....T..................T.... CCCAGCCCTCACAGGTCCCGGTAGACCTCGCC 9474427 29 86.2 0 ......A.........T.......T...A | ========== ====== ====== ====== ============================= ============================================================================================= ================== 44 29 93.2 33 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CCAAGTCGACCACCGATGGCTCCAAGGACGCGGCGCCGACACCAGCACCCCGACCACCTGGCGGGACATCGGTGCCCTCCGAGACGTCCTCCTCCTGCCGCAACGCGTCACCAGCCCCGGCAGGCGCCGGCCGTATCAACTCAACGGCAAGACCCACCACCTGTCCCGGCTCGACGGCCTCGTACGCGAGTAACATCCCGAACAACCAGCACCTTGATAAGAAAACACACACGCGCCCACAACACCGCAAAGCATGACGTTCCCGCTCCGCACACGCGGAGGTCACCCGGAACCCGAATTCGTTGCGGTCGACTACTCAGGCGGGCTCTCCGCGCAAGCAGAGGTGAGCCGTACGCCCAACCCGGAGCGATCCGCCTGGGCGCGCACTCTCCGCACAAGCGGAGGTGAGCCAGGCTGGTGCCTCGACCATGGGCGGAGGCAGAGCCCTCTCCGCGCAAGCAGGAGTAAAGCGTGGGGTGTCGCCCAACGGGGCGCCTACG # Right flank : TGGCCGGCGGCGTGAGTTCAGGCGAAGCGCTGCGGTCGAGCCAGCCCGCCTGATACCAATTGCTACGGTCACTTAGCAACTATTAGAGGGGGGCCATGCACTCCTGGCAACTCCGCCACATCCGCGAACGCCTGATCAACGACTTTCTCGCGGAACAGAAGCGACAGCGAGGCGAGTTCGATGAGCGCCTGGCAGACATCGACAGGCAGATCAGGGAAGCCGAAGCGGCCGAAGACCAGAACCGCAGCGACCCAATGGTCCTCGTCCGCAACAGCGTGGGCGCACCTCGTCGCGTCTACCACGACGCCGACGACCCCTGTGGACGCACCAAGCACGGCGGGCGCGAGCAGCAAGGGCAAGGATTCACGCGAATACGGGAGTCGGACGCCAAGAAATTGGATGGCGGAGCCCTCACTCGATGTACCGCCTGTTGGAGCCCCTACAACTAAACGAAGGCCCGGCCTGGGTGTTGGGCGGGGCCGCCAACGCGAAGGTGCTCC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-41] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 9486257-9487057 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084203.1 Streptomyces sp. Go 40/10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================== ================== 9486257 32 66.7 1 ...G......-..C..GC.......CG.CGA.C G Deletion [9486290] 9486290 33 100.0 28 ................................. GCGCCCCCATGCCCCAGACCCTCCGCGC 9486351 33 97.0 28 ..............................G.. GGAAGGCGGGGCATGCCGCCGAGTCAAC 9486412 33 93.9 28 .............................G.A. CATGACCACCAACAGCAAGGCAGCCCAG 9486473 33 93.9 28 .............................G.G. AGACGACCTGCCAGAGGGCGCCGAGAAG 9486534 33 84.8 30 ........................TG.TC.G.. GCTGGAGCTGGCGCACGGCTTCGTCATCGC 9486597 33 90.9 28 .............................AG.A GCCGCGCGGCGGCCGATGCCACTCACGA 9486658 33 90.9 28 .............................G.AA CGGCCGACCAGCTCCGCCTCGCCCAGGT 9486719 33 90.9 28 .............................AA.T CCAACGCGGGAGGAGGCGGATTCGCAAG 9486780 33 84.8 28 ....................A...T....G.GC TGCCGGCCATGTCGGCGGACCAGAAGTG 9486841 33 84.8 28 ............C...........T...A.G.A TGGACGACAAGAAGGCCGCCGCCCGCCG 9486902 33 84.8 28 ..T.....................T....G.GA TCGAGGTCTGCCTGAACTGCCCAGTCAT 9486963 33 81.8 29 .C......................G...AT.GC TGTTAGGAGCGGATTCTCTTCCACTGCAA 9487025 33 78.8 0 ........T.....T.T.......T....A.GT | ========== ====== ====== ====== ================================= ============================== ================== 14 33 87.4 26 GTCCTCCCCGCCGACGCGGGGGTGCTCCGCCCG # Left flank : CTGTCAGTGGCGACCTGTAGGGTGGCCGCGGCAGCGGTCCGCACATCAGAGCTGACTTTCAGAAAAAGCCCGGATCTAAGGCGAACGTGGAATCCGTGCCAGCGGACGTAGTGAGCTCGTACTATTGCTCATGTGTCCCACCGGCACCTTGATAAATGAAATGGGAAACGCCGACAAAGTGCAGGTCAGGAAGTTTTCGCTCCGCGCACGAAGGTCACGCGTGATTGCGGATCGAATGACCGCCCTTGTTATCGGCCGCTCCGCGCACGCGGAGGCCACCCGGTCGCGCATGCGGACAGCGGTTACGGTCAGCGCGACATAGGCCATGCCAGCCGCCGGCCTTCGCCTAGGTCCACGATGCGAGATCAACAACCATGCACAGCTAGTTGTCCGCCGAAGCACAAGCCCCCTCCACCAGGCAGGCCAGCGCACGTTCTCGCGGGGGTAGCTTCGCGTATGCGTTCGACCGCAACGGGAGGCGCGGGCATGCGCGGCTCATG # Right flank : TAGTGCGGTCTAGGGTCGAGCTTGTCGCGGTGGGTGTTACGCCGCGCTCAGGGCCTGTTCGGCCCATTGCAGGCCGAGGGCGGCGAGCGCCTGGAGCTGGGCCGTGCTGAGTTTGGCCCGCCGGGTTTTGGTGTTGGCCAGGAATACCCCCAGTTTCACCTGGGTCCCGTCCGGCAGGGTCTCGATGTGGGAGCGGCTGACGGGCCCTGTGGAGCCCTCGCGCTCCTTGTACTGGGCCAGTTTTGCCGCGCACCCGCGCTCGAAGCCGCCTGAGCCGCCCCTGGGCGCCCTGACGGGGGTCTTCTGCTCCGGGAGCAGGGGCGTGATACCGAGAGCGGTCAGGCGCTCGCGCTGCCCCTCAGCAAGGCCTTCCCACACCACGTGCTCACGCTGCCGCTGAAGCCACCGGCCCACGTCGATCCCGCCCGACGTCACGCCCGGCACGATCTCCTCCACCCCGGCACCGAGGGCCATCAGCCGGGCGACTGCGGCGTAGGTGC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:-0.22, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //