Array 1 30246-31861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEL010000034.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-18 NODE_34_length_47067_cov_5.602940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30246 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 30308 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 30369 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 30430 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 30491 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 30552 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 30613 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 30674 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 30735 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 30796 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 30857 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 30918 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 30979 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 31040 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 31101 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 31162 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 31223 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 31284 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 31346 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 31407 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 31468 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 31529 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 31590 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 31651 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 31712 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 31773 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 31834 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1082-2979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEL010000018.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-18 NODE_18_length_109511_cov_5.629114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1082 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1143 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1204 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1265 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1327 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1388 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1449 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1510 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1571 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1632 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1693 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1754 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1815 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1876 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1937 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1998 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2059 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2120 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2181 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2242 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2300 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2361 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2422 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2483 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2544 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2605 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2666 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2727 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2828 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2889 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2950 29 93.1 0 A...........T................ | A [2976] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //