Array 1 45-1548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPUW01000066.1 Lysinibacillus sp. BF-4 contig00066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 45 33 100.0 34 ................................. ACAATGCGGCAGGTGGCAACTACGGAGACCACCG 112 33 100.0 33 ................................. ATTACTTTGATGCCATTTACATCAGCATTGAAA 178 33 100.0 33 ................................. AAGAAAGCGGCACAGGCGATTGTAGGCGGCTCA 244 33 100.0 34 ................................. AATCATGCGGCGGCTCGTGTTAGCGTCAATCTTT 311 33 100.0 34 ................................. GCTTTGCGCTCCTGGTACTTAATCCAGTCAGCTG 378 33 100.0 34 ................................. GAAATGGGCGGTATTACACCTGCAACAATTAATA 445 33 100.0 34 ................................. CAGCTGTATACAATTTCATCGTAGCGTTCTGTGC 512 33 100.0 36 ................................. AACCATTCAACACCTTATGTCACGTTACGATACATC 581 33 100.0 33 ................................. TACCACCTGAACAAGCAACACCGCAATATTTAG 647 33 100.0 33 ................................. GACTGCTGGTCCTGATGGTGCTTATATTTATCA 713 33 100.0 33 ................................. GGATGTGCTGGGTAGGTAGGCAAGTCATCCACT 779 33 100.0 32 ................................. TAAAGGTATCAATGCATCAGGCTCAGCTTTCG 844 33 100.0 33 ................................. TTTAATATCCTCACCAGTTTTGCCCCACAGTCC 910 33 100.0 35 ................................. AGGAGGAATATGCTTGGAATACATGCCGTGTTTGC 978 33 100.0 36 ................................. TTTGTAAGTGGGTGTGATAGCCCTAACAATCCGTAC 1047 33 100.0 33 ................................. CGCGACTAGGATTAGACATCGAGCTGAAAGCGA 1113 33 100.0 33 ................................. GTGCCCGAATTTAAAGTGTTTTTTACAACCAAC 1179 33 100.0 34 ................................. CGTGGGAGAGAAACGCTTTTTATATTGGTGAAGA 1246 33 100.0 33 ................................. ACCACAGGCGATAGCTCCTAACACAGGCACACG 1312 33 100.0 36 ................................. CATTGACACCCCAAGCGCTGAAGCTATCCTTTTGAG 1381 33 100.0 34 ................................. ATCATCAAACAAAACCGTTTGCTTGAGCAACACA 1448 33 100.0 35 ................................. GATTAATGCAGTTGTTAACCAGGTTGTCCACACGC 1516 33 93.9 0 .......T.....................G... | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 99.7 34 GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Left flank : GTGGATTGAAATCGTACTACGTTATCGCCGAAGAGTTAGGTATTG # Right flank : TGGTGGAAAAATTTTGACTGCCTTTGTCGCTTTTTAATACGTTACTTCCGTATTGAAGGGCAAAGGGGGAGATACTATGAAGTTATTAACTGAAGAATCACCGTTAGTCGTTTTGCCGCAGTTGGCACAGAAGGTGGGATTGAATGAAGCGATTGTGTTGCAGCAACTTCATTACCGTTCGCGCCTCGGCGTGGAGGAACGAAGCGGCAGGCGCTGGGTGAAAGGGTCGTATGAAGTGTGGCAACAGGAGTTTCCGTTTTGGTCACTCACTACGGTTCGACGCACGTTAATGAAACTTGAAGATAAGGGGTATATCCAGGCGACACAAGCGTTCAATCGCTCACGCAATGACCACACCAAGTGGTACACGTTGTGCTACACCGAGCTAGTCAAAGTGACCGGTTCGAAATGGATGTTACGTTACGACCACATTGAGCACAAGGGCTTGGTCAAGTTGGACGGAACAATACGTAAAGATATAAAAGATATAAAGAAATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1598-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPUW01000056.1 Lysinibacillus sp. BF-4 contig00056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1597 33 100.0 33 ................................. AGCAAATATTAAAGTCGTGAATGTTACATCCAC 1531 33 100.0 33 ................................. GCAAATGAAGCACGCTATGAGCAATATGTTGAG 1465 33 100.0 33 ................................. TGCCAACCTATTTATGAAGAGTGGTTGGCAGAA 1399 33 100.0 36 ................................. TACGATTATGATAACGTCGTAACATCATGGTTTATC 1330 33 100.0 33 ................................. ATGACAGCAAACCTTGACCGTGTAGTCGTTGGT 1264 33 100.0 33 ................................. CGAACGAATAGGGCGCGGAGTCTGTATTGGCTG 1198 33 100.0 34 ................................. CGTCTCGTTCCTGGCACAATTATTTGTCCGAAGT 1131 33 100.0 34 ................................. ATTTAAAAGGATAGCCAAGCAAGCGCTTATGCCG 1064 33 100.0 33 ................................. GCATTGCGTATTGTGGTTGGCGCCCGGTCCTTG 998 33 100.0 33 ................................. ATCTAACTGTTGCCAAGGCCCGGGTGTATGCAA 932 33 100.0 33 ................................. TATTAAATCTTTCTTTCCTTGTACTTTCGGTGA 866 33 100.0 35 ................................. ATCAGCCAAAACTATCCTTATTGGTCTTGCAGCTA 798 33 100.0 32 ................................. CCATATTTTTGCTCAGGTCACACTACGTTTTG 733 33 100.0 34 ................................. TGAAGACCGTGACAATAGCACAAGTGGAGATTTA 666 33 100.0 34 ................................. GGATTTACCAACTTGCGCTGAAGCCATAATTACA 599 33 100.0 33 ................................. AATGAGTACCATGTGACTACTCATTACGTCTGC 533 33 100.0 33 ................................. AATTTGATTGGCTGCGCGACTTTCTTGTTTGCC 467 33 100.0 34 ................................. ATGGAACGACTTAAATGACCAAAACCTAATTAAA 400 33 100.0 33 ................................. CAATCAAACTCATCGCTTAAATATCCGCAATGC 334 33 100.0 34 ................................. GTAAATTTCCGCAATCGCTAACATCGTACGTGTT 267 33 100.0 33 ................................. TACAATGGCTTTTTTAAACAACTTTAGAATACT 201 33 100.0 33 ................................. AATTGTGTTATCTACCTTACGAATACCCACAGC 135 33 100.0 35 ................................. GTATTGGAGACGTTTTTCTTTGAACCTGATTTCCC 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 100.0 34 GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Left flank : GCTCGTTTTTTACGAGGCGATTTAGATGCGTACCCCCCTTTATTAGTGAGGTGATGTAATGCTAGTTTTAGTGACATATGATGTGCAAGTCACATCTTCTGGCGGTGCTAAACGTTTGCGTAAAGTAGCTAAAAAATGTGAGCAATACGGTGTGCGTGTACAAAACTCCGTATTCGAATGTGTCGTGGATGCCACGCAGTTACGTCTGCTAGAAATGGACTTAGCAGCAATTATTAATCCTGACACTGACTCGCTACGTTTTTACCGCTTAGGCAATAATTATGAAAATAAAGTGCGTCATATTGGAGCAAAGGAAGCGATTGAAGTAGAGAAGCCGTTGATTTTTTAGAAGCGGCGAACCCCAAGCGCCCATGTTTTTCCCGGGAGGTTCGCACAGTCATCACGCTCTTTTCCTAGCCGATTCTCCCAAGACACTCCCAAAGCTGTCGCACCAGACACAATATCTAGTGCAACACCTTAGCAAAATACTATATTTTGCG # Right flank : TCGAAATCGCGTCTTGATGCAAAAATTCAAGAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 1-1921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPUW01000079.1 Lysinibacillus sp. BF-4 contig00079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1 33 100.0 33 ................................. TTATATGTGGGATGAAAAAGCAGCAGACCGTGG 67 33 100.0 34 ................................. TATGCAGATTACGAGAGAAAATTTACTAGACTGG 134 33 100.0 33 ................................. TACTCTAGAAGGAATCACATAGTTAGTGCCTTC 200 33 100.0 34 ................................. AAGGTTTGACTCTTAAGGTGCAAACAGGATACTG 267 33 100.0 34 ................................. CTAACCGTGCGCCACGTCTTGAAGTAACGCCGCC 334 33 100.0 33 ................................. AAGAAAAGGCACGATGTTAGGTAGTACCTATTA 400 33 100.0 34 ................................. TCATCAAACCACTCATCCCCAAAAACTTTATGCA 467 33 100.0 35 ................................. CCAGCGAAGTTGAGGTTAATCAAGGCGCACCTCTT 535 33 100.0 35 ................................. GTCAATGACGACCCTGGTTACATTCCCAGCGAAGT 603 33 100.0 35 ................................. GCTTGCGAGACATTTTAGAGTCTATCGAGGATATC 671 33 100.0 35 ................................. CCTCTACCACTTTAAAGCCTGGTAGAGCATCTGGC 739 33 100.0 36 ................................. TACTTAATCGACGGAGGGCATCGCCTGGGTAAGACC 808 33 100.0 34 ................................. CGAAAGCCTACAGAGATTGTAGCGACTGAGGGCA 875 33 100.0 35 ................................. ACACTTTTGGGGTCAAAGAACGCCTCGAATTTCTT 943 33 100.0 35 ................................. TTGGACCACTTAGCAGGTACAACGACACTGCGTAC 1011 33 100.0 33 ................................. TGGTACGTTTGAGGAGTTATCCGCTCTTACAGG 1077 33 100.0 36 ................................. GAGCTGATCTTGGGGAATAGCCTGCACGTAATGCGG 1146 33 100.0 33 ................................. TTGCAAAACGTAAAGTCAAAGAGGCAGAAGCTG 1212 33 100.0 36 ................................. TATTTAACGTAATGGTGAGGGGCATGAACGCTGTGG 1281 33 100.0 34 ................................. GAGCGAGTATGTATCACGCACCACTTGCGCAGCA 1348 33 100.0 35 ................................. TATAAAGATGGCGAGCGTTTCGGCGGTAATGTGTC 1416 33 100.0 34 ................................. GTAATGTTGTGCGCTACAATGGCACTGTTTGGTA 1483 33 100.0 34 ................................. TAAAACATCAAGCAATTACGGAAAACAGGCGGAT 1550 33 100.0 33 ................................. GTTTACCGAGTGGTAGAGAGCTGTGCTACCCTA 1616 33 100.0 36 ................................. CTGCCAGCGGACCTTGAACAAGAAATGAAAGAGGTA 1685 33 100.0 34 ................................. CATCCTGTTCGCTTTTCATCCGAACGATGCGTTA 1752 33 100.0 36 ................................. AGCGTGGTATACCAAGTATCAGATCCAGAAGGACAC 1821 33 100.0 35 ................................. CGTTTGTGTATAAATAATAGTATATAACATTGACT 1889 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 29 33 100.0 35 GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Left flank : | # Right flank : TACGTGAGCGCACATTATTTACAAGAGAGATAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTTCATTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA //