Array 1 24485-23592 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADJ01000028.1 Neisseria meningitidis strain Neisseria meningitidis isolate R911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24484 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24418 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24352 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24286 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24220 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24154 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 24088 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 24022 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 23956 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 23890 36 97.2 30 ............T....................... CACCCTGATATTCCGCAACTCGATATACTG 23824 36 97.2 30 ............T....................... GTAAAGTCGGCACAAAGTCTTCAGGTTTCA 23758 36 97.2 30 ............T....................... CATCGCGCTGAACATACCGGCGCAGCCGCA 23692 36 97.2 29 ............T....................... CTTCCGGTATGACATCACGAAGCGGGGCG 23627 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //