Array 1 974403-976138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032444.1 Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 974403 29 100.0 32 ............................. AGCACTGTTAATTTATGCGGCACGTTCCTGAT 974464 29 100.0 32 ............................. AATTCGCCCGGATGTTCACTTACGGGCTGGGC 974525 29 100.0 32 ............................. TTGATCGGGATTCTGGCCGCACTGGGTGCCGC 974586 29 100.0 32 ............................. GGGCAGATTGCCAGGCGTGACGCGCTGGCCGA 974647 29 100.0 32 ............................. CGAGGGCGGGTTTCCAGTGGCTACCGTATATC 974708 29 100.0 32 ............................. ATTGGCGGGAAATGACGGGGGGCTACTACGCT 974769 29 100.0 32 ............................. TGCGGATTTACCGTCGGCTAAACCACGCTGAT 974830 29 100.0 32 ............................. AATTCTCAGCATATCTTTTAATATCCCCGGAT 974891 29 100.0 32 ............................. GGCGCTGCTGGTGTTGTGACGACAATTGCAAT 974952 29 100.0 32 ............................. ACGATAAACCGATAGACAGCCTGGCATTTGTT 975013 29 100.0 32 ............................. GGTACTTTTGATACCAATAAAGACAGAATTAC 975074 29 100.0 32 ............................. CCGGGGGCTTAACTTCAGGTGCAAGCACCATT 975135 29 96.6 32 ............................A CGGGGGGAAAAACCGCCAAAATATACGACAGC 975196 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 975257 29 100.0 32 ............................. GCGGCCAAGATAATCAGGATCAGCTGGGTCCT 975318 29 100.0 32 ............................. TGTATTTGCGATACGAGACATAACCGTATCAC 975379 29 100.0 32 ............................. GCGTTCGAGCGCAGCTTAACAGTCTGGGAACC 975440 29 100.0 32 ............................. GTGCGAAAACAATAAACGTGGTGGAATGGGTA 975501 29 100.0 32 ............................. TAAACAGACTGAGATTTTTCGGTTTCCGGATC 975562 29 100.0 32 ............................. GCGTTACGCAGCCCGGCAGCACAGTCAGCACA 975623 29 100.0 32 ............................. AGCGGCTACGATGACGACCTGCTGGCAGGCGA 975684 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 975745 29 100.0 32 ............................. GGGTAATTATGACGAGTCAGAGCATATTGCCC 975806 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 975867 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 975928 29 100.0 32 ............................. GGCCTGAACGGCGATCTGATTACGTGGAGTAA 975989 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 976050 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 976111 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTTCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 992301-995320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032444.1 Salmonella enterica subsp. enterica serovar Fresno strain USMARC-69835 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 992301 29 100.0 32 ............................. TACATATCAACGTAACCCGGCTGCGTCTCCGG 992362 29 100.0 32 ............................. CGCGTCGAACTCATCCTCAGCGATACGCACCA 992423 29 100.0 32 ............................. CCTCTTTCAGCCTGGCGGCTTTCTTTCCAGTG 992484 29 100.0 32 ............................. CCACAATCAGATCGAAACGCTCTGGATCACCG 992545 29 100.0 32 ............................. ATTCGACTCGCGTCTTACCGTCTGCTACGTAC 992606 29 100.0 32 ............................. GGGCGACCTCCGTTAATTATCTCGACGTTCCG 992667 29 100.0 32 ............................. CGGGCAATTATACGGCTTTACCTGATAGAAAC 992728 29 100.0 32 ............................. CATTACCCCACTCAAGATACGATTTTGCAGAT 992789 29 100.0 32 ............................. CCTGAACGCAAGGTCGCCACCGTAGCAATATC 992850 29 100.0 32 ............................. GCGGCAGTGAATACCAGGCAAAGCCGCGCCCA 992911 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 992972 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 993033 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 993094 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 993155 29 100.0 32 ............................. GGTTCACGCAGTGGAGCCTTCCACCTGATAAG 993216 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 993277 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 993338 29 100.0 32 ............................. CTACTGAGTTATATCCGAGCGCTGTTGAGTTA 993399 29 100.0 32 ............................. TCAATCAGCATTGCGTTCCAGTCATTCGCCAT 993460 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTCTCGC 993521 29 100.0 32 ............................. TCGGTACACGACATGACCACAACGTCATTCAA 993582 29 100.0 33 ............................. CTGTGACACAGCGCCACGTCGGCCTCAGTCAGC 993644 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 993705 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 993766 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 993827 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 993888 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 993949 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 994010 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 994071 29 100.0 32 ............................. GCTATTCCCCTGATCCCCACTCTCGCCGCCAC 994132 29 100.0 32 ............................. TTAGGGAGAAAACTCGGTTACTCACAGACCAG 994193 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 994254 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 994315 29 100.0 32 ............................. GCGGAGATCCGGGGGAGCTATTTCAGGTCATA 994376 29 100.0 32 ............................. ACAACAAAAACGCCGGGCATAACCAGGCGAAA 994437 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 994498 29 100.0 32 ............................. TTGGAGACTGTGGGTGTGATCTCCATCGGGAA 994559 29 100.0 32 ............................. GACGTTTGATGGCTGGAAGGTTCTGTTTGAGA 994620 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 994681 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 994742 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 994803 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 994864 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 994925 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 994986 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 995047 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 995108 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 995169 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 995230 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 995291 29 100.0 0 ............................. | A [995318] ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCTGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //