Array 1 2115-2448 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAT01000389.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2745 NODE_389_length_2505_cov_1.38337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2115 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 2176 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 2237 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 2298 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 2359 29 100.0 32 ............................. TAACCATGGCTAAGAAAAAAACTTACAGGACT 2420 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : CAGGCTGGTGCCATAGTTTTGAGTTTCTACCGGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16985-18764 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAT01000040.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2745 NODE_40_length_26184_cov_1.29287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16985 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 17046 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 17107 29 100.0 32 ............................. GCTGAAGCGCCAGGATACCCTGAAACGCTACC 17168 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 17229 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 17290 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 17351 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 17412 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 17473 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 17534 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 17595 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 17656 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 17717 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 17778 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 17839 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 17900 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 17961 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 18022 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 18083 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 18144 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 18205 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 18266 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 18327 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 18388 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 18449 27 69.0 15 ................TTCT--.C.G.T. GCAACGACAGAATGC Deletion [18491] 18491 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 18552 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 18613 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 18674 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 18735 29 96.6 0 ......G...................... | A [18762] ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.6 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 322-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAT01000514.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_2745 NODE_514_length_352_cov_1.13585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 260 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 199 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 138 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCCGCTTCTGGTAGTGCTTCCAGACCCT # Right flank : GATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTAGATCGGAAGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //