Array 1 2289-124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHID010000003.1 Desulfurispira natronophila strain DSM 22071 Ga0415272_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2288 29 100.0 32 ............................. ACGGGTTAATCTATCAGGCAGCATGGCGCGGC 2227 29 96.6 32 ............................C GTTTTAATCTCAAGATTTTTGCTTGCCATTTC 2166 29 100.0 32 ............................. GCGGCAAATCTTTAAGTAGGTTTCGCGCAGTA 2105 29 100.0 32 ............................. GAGGTTGACCGCGAAGTGATTATCAATTGCGA 2044 29 100.0 32 ............................. GTGCAGAACCTTGCTTTACGCTGCAAAACACT 1983 29 100.0 32 ............................. GGGTTGCTACTGTCCTTGGCTTCGATGGTTGA 1922 29 100.0 32 ............................. CGGCATTTTATCCGGTGCCCAAGCGCGTATCT 1861 29 100.0 32 ............................. CGCGGTGATGGGTGCCTGATCCTATTCAGCGA 1800 29 100.0 32 ............................. GGTGTAATTAGTGCTAGGGTGGGTAATGTTAC 1739 29 100.0 32 ............................. GCTGCCAGGACTGCATCTTGGTTGTCTGTCGG 1678 29 100.0 32 ............................. CTGGCACTAGGGGCTGGCTGGGACGATGAAAT 1617 29 100.0 32 ............................. ACGTTACGAAAATGGTATCGCGACGAGTTGGA 1556 29 100.0 32 ............................. TTTCGGCTACACGCTGGGAGCTGATTGGCGGG 1495 29 100.0 32 ............................. TCCGACCTCATCAGTCAAGGTGGTCAGGGTGC 1434 29 100.0 32 ............................. GCTGGCAGCTTGGAGAACAGCCACCGCACGAG 1373 29 100.0 32 ............................. CGCCTGCCTGATCCGTCCGGGATTGCCCGTGA 1312 29 100.0 32 ............................. GCCGATATGCAAAAAGAGTACGATGAGCTGAA 1251 29 100.0 32 ............................. CAGCCAAGGGCAGCGGCAACCCCCTGATTGAT 1190 29 100.0 32 ............................. TTGCAAAGGCCATTATGCGCGCACCTCCCCAA 1129 29 100.0 32 ............................. GTACGCGATAACCCTACCAATGCTTTTAATGG 1068 29 100.0 32 ............................. CCTTTATTGCATCCCAAACATCAATAAATGTT 1007 29 100.0 32 ............................. AGCGTTTTAATGTCCAGCGTAACCGGGCGCAA 946 29 100.0 32 ............................. GTGTTAAACGCGATCGAATCACAGGGAATATA 885 29 100.0 32 ............................. GAGGTACGGGATCGTCTGACACAAACGGGGAT 824 29 100.0 32 ............................. TCAGGATCAGCAGTCAGGCAGGCATCAAGCGC 763 29 100.0 32 ............................. CCAACCCAATGATCACACGTTGGGAATGGGCT 702 29 100.0 32 ............................. CTGGAGCAACGAAGGCGACGTGGTGCTTGACC 641 29 100.0 32 ............................. TCATATGATGGCGCAATGAAAGACCTTGGCAA 580 29 100.0 32 ............................. TAAGGAGGTGAAACAATGAGCAACTGGCCTTC 519 29 100.0 32 ............................. TTATTGGGTGCAATGGGAAATGATTTAAAAAC 458 29 100.0 32 ............................. TGCAGGGAGCTTATGAAATGAAAATTGATCGC 397 29 96.6 33 ............................T GCAGCTAGAACAAGTACGGGATCCGTTTCATTC 335 29 100.0 32 ............................. GATGTGAGAGTGGTTATAGAGGTTTGCGGTTT 274 29 100.0 32 ............................. GCAGTCATCATGCGCCCCGTTGGGAAACTGGG 213 29 100.0 32 ............................. GCGGTTAAGTCATACGATGGCGCAATGAAAGA 152 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 ATGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCGTTTGCTGCAACGCATTATTCCCAGTATTGAACAAGTATTGGCAGCCGGAGGTCACAAAGTGCCGGAAATTCACGAAGAAGCCGTGGATGTGGCCATACCCAATAAGGAAGGAATAGGTGATGCTGGTCATCGTGGTTGAAAATGCACCCCCTCGCTTGCGTGGGAGACTAGCTTTGTGGCTGCTGGAAATACGCGCAGGAGTCTATGTGGGAAAAGTGTCGCGGCGAGTACGTGAAATGCTCTGGGAAAATGTGGAAAAGGGAATCGAAGACGGAAATGCCATCATAGCCTGGAGTACCAACACCGAATCTGGATTCGACTTTATAACCTTTGGAGCAAATCGCCGCACACCAGTGGAAATGGAAGGAGTGAAACTGGTTTCATTTCTCCCTGTAGAGAGCTATAATGACGACAAGTCGCCAGTTAGTTGACTAGTGAAGTTCGGTGCATTTTCTATAAGGCCAGGAACCATTTGTTTCTGGAGAGATAGAGGAAGT # Right flank : GTGTCGATTAGTGTTCCAGTTGGCACTAGCCCACATTTGACAACAGCCCCCCAAAAACACCCTCAAAATCGCCAATTTTTCAACATCAACCCGCATGCCTGCTGGGCTGATTAGTGAAAAGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48341-49967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHID010000009.1 Desulfurispira natronophila strain DSM 22071 Ga0415272_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 48341 36 100.0 35 .................................... CATTGTCTGTTCAGTCCTGCCAGCACTAACATTGA 48412 36 100.0 33 .................................... GACGAAGTCTTTTCCTACTGTGTATTTTTTAAA 48481 36 100.0 37 .................................... TTTCGCCCTCCTCAACCTCAAGCTCCTGCGGCATTTT 48554 36 100.0 40 .................................... GCAGGGATGATTCTGTACTTTACAACTTCACCATCTTTGT 48630 36 100.0 36 .................................... GCCGAGTTAGCCCGCTATACGGGCCTTTTTGTGACT 48702 36 100.0 38 .................................... CAATCGTTCCGCCATTTCATTTGCTACTGCAATAGCAG 48776 36 100.0 39 .................................... ATTCCACGGCGTAAACCCAACGCCCGTAACTCTGGGGGC 48851 36 100.0 37 .................................... TCATAACTCCGGTCTCGCTTCACTAAAGTGAACAGAC 48924 36 100.0 37 .................................... GGATAAATCAACACCGCTCAAGTTCGCGCCAGTCAAA 48997 36 100.0 38 .................................... ATGATCTTCGTATTACTAGGGAATAATTGTTTTAGTTT 49071 36 100.0 35 .................................... CCATTTCGGGAGGATAGTCAAAGATGATTCTTCGC 49142 36 100.0 37 .................................... TTAGTACTCCTCATCTTGCGTTCTTTGAGATAGCAAA 49215 36 100.0 31 .................................... GTCCCAATCGGCTTTCATCCAGCTTCCGCAC 49282 36 100.0 34 .................................... CCAGAAACGGTTCTCATACGTTAGGATTCTCTCC 49352 36 100.0 40 .................................... GCTTCAGCCACATACTCCACCTGATACGTATACCAAATGG 49428 36 100.0 35 .................................... CTCCCTCCGGGAGACTTCCCAGTGTTCGTCGTCCC 49499 36 100.0 31 .................................... GTCGACGTATATTCCGTCGACGAGCTCCTCT 49566 36 100.0 36 .................................... TAATTTTAGCCTGTGGCATTTTCTGCCCTATACGAT 49638 36 100.0 37 .................................... CTCAATCTGCTCTTTTGTGTATTTCTGTTGGGGGAAT 49711 36 100.0 37 .................................... TTTAGTATGATAATAGCAGCCATCTTCATAAAGGTCT 49784 36 100.0 36 .................................... GCGCTCCTCGATATCTACCAATACCCCAAACGCCGA 49856 36 100.0 40 .................................... AAACCCTGCTACTATTTGTAGCAGGGATCAGGAATCTCCC 49932 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 23 36 99.9 36 GACCAAAGACCTGCTGGAATCAGCGGGGATTGAGAC # Left flank : AAGTGGAAAAACTTCGTGAAGAACTTGTACAATTTAAAAAAGAACTACAACTACAAAATCCTGAGTATATTCACCTCTTTTATTCCGGTCCAGTAGCCGTAGCCATAATACTCGGTGATATTTTCTCCAACTGTAAAAATGTGATAATATACCATCATGGCGGCGGTCATTATCATCGCAGTGCCCTCGTTTAGCCGCTTGGTGAAACACCTTATTTCGGACAGGCAAATGAAAAATCCTCCAGGTGCAAGGCGCTCGCAGAGCCTGGAATGAGGCGTACATGGAGTACGTTGCAGTGACGAGCGACAGCGAGCAACACCGCAGATTGAGGATTTTCAGCAGCCTGTTAGGGCAAGTGGAGATTTGCGACCTGCTAAACAGTTCATTAACAATGGAATACAAATTTCTGGCTTTACAAAGAAGATTTTTTCCATAAAATGTCGGTGATTTGCGAAAACAGCCTCGTCGATCTTTCCTGTAAAAGCCATGACAATGACGGA # Right flank : GGGCTTGTCGATGCACGCCGGGCAATGGAAAAATACGCAGGTGCAAGGCGACCGCAGTGAGAGGAGTGAGTCGTAGCAGATGGGTGCCTTTTGACGGGCCCTACCTGCGCGTCACAACTACCAGCTATCTCTACGAAATAGAGTCGACAGCTATTTCACATTCTATCTTGACAAAACGTGCTGCATGCTTAAGTTAATGCGCATGACTATACGCATGGAAAGGTGGTTAGTATGGCAAGGTGTGCGACCAAACGGCAAGCTACAAACCTGACGATTGACAGCCAGCTTCTTGCTGAAGCACGAGCCTTTAATGTCAGTCTTTCACGGGCGGCAGAAGACGGAATCAAAAGAGCCATTCAGGAACACCGTGCCGCAGCATGGCTGCAGGCAAACCACAGCGCCTTACAAAGTTCTAACGATTATGTGGAAAAGCATGGGCTTCCAATGGACCAGTACCGGAACTTCTGATGGCGCGATTTGATGTGTACCAAAATCCCCAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCAAAGACCTGCTGGAATCAGCGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //