Array 1 5-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETW01000026.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287 isolate FDA_2010_242_Lunch Meat-IA-5 SEEM8287_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 66 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 127 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 189 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 250 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 311 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 372 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 433 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 494 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 555 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 616 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 677 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16840-18026 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETW01000026.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287 isolate FDA_2010_242_Lunch Meat-IA-5 SEEM8287_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16840 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 16901 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 16962 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 17023 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 17084 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 17145 28 96.6 32 ....................-........ CACTCTGCGTAATGGCAAATTCCAATTCTTTC 17205 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 17266 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 17327 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 17388 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 17449 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 17510 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 17571 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 17632 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 17693 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 17754 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 17815 28 96.6 32 .....-....................... GAATTATTTAGTTGATCTGAAGAATTCAGGAA 17875 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 17936 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 17997 29 93.1 0 A...........T................ | A [18023] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20644-20977 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETW01000004.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287 isolate FDA_2010_242_Lunch Meat-IA-5 SEEM8287_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20644 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 20705 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 20766 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 20827 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 20888 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 20949 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //