Array 1 1208502-1209995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085983.1 Salmonella enterica strain SZL 31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1208502 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 1208564 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 1208625 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 1208686 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 1208747 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 1208808 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 1208869 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 1208930 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 1208991 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 1209052 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 1209113 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 1209174 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 1209235 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1209296 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1209357 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1209418 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1209480 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1209541 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1209602 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1209663 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1209724 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1209785 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1209846 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1209907 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1209968 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1226278-1227381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085983.1 Salmonella enterica strain SZL 31 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1226278 29 96.6 32 .............C............... GTGATCCGCGCCTATGACGCAATGGTAACGAC 1226339 29 93.1 32 .............C..............T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1226400 29 96.6 32 .............C............... CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 1226461 29 96.6 32 .............C............... GGCGTTTTATTCGACCTGAAAAAATGGATCGT 1226522 29 100.0 32 ............................. ACATCTCGCGGACAATAGCGATTTCCACCGTC 1226583 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1226644 29 96.6 29 ............................C CTTGTTAAATACAGGCGGCGGCGGGGTTG 1226702 29 100.0 32 ............................. AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 1226763 29 100.0 32 ............................. CAGGATTGGATTAATGAAGACGGGTACGAAAT 1226824 29 100.0 32 ............................. AGATTGCAGAATTATATTTCACGCTGGCAGCA 1226885 29 100.0 32 ............................. CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 1226946 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 1227007 29 100.0 32 ............................. GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 1227068 29 96.6 32 .............C............... TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 1227129 29 96.6 9 .............C............... CGGCCAGCC Deletion [1227167] 1227167 29 79.3 32 A.T.AAA.A.................... ACAGGGTATATGAGCTTATACGTCATGAACCA GC [1227181] 1227230 29 96.6 32 .............C............... TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 1227291 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1227352 29 89.7 0 A...........TC............... | A [1227378] ========== ====== ====== ====== ============================= ================================ ================== 19 29 96.6 31 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //