Array 1 1418452-1422497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025827.1 Akkermansia muciniphila strain EB-AMDK-12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1418452 33 100.0 33 ................................. TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT 1418518 33 100.0 34 ................................. TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT 1418585 33 100.0 34 ................................. AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT 1418652 33 100.0 34 ................................. CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG 1418719 33 100.0 34 ................................. TGTTTCTACAAGTTAGATACATTTTAATTATATA 1418786 33 100.0 34 ................................. CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT 1418853 33 100.0 33 ................................. ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC 1418919 33 100.0 34 ................................. ATAATAGTCCGGGGAATGTACGTCTACCGCACCC 1418986 33 100.0 34 ................................. GGCAAACAGGACAAGGGACAGGACGCCGGAACCG 1419053 33 100.0 34 ................................. TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA 1419120 33 100.0 34 ................................. AATATAGGCATATCGGCCTGCCCCCTCATAATAG 1419187 33 100.0 34 ................................. CATGATTGTTTCTACCTCGCCGGACGGAAAAATG 1419254 33 100.0 33 ................................. CCCGTGCCTGAAATAAATGTCTTCCGACATCGG 1419320 33 100.0 34 ................................. TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC 1419387 33 100.0 35 ................................. CGGATGCCACCGGGTGCCGATGACGAACACCCGCC 1419455 33 100.0 35 ................................. CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA 1419523 33 100.0 34 ................................. TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC 1419590 33 100.0 33 ................................. AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC 1419656 33 100.0 33 ................................. TGCGATACGAGGCTACCCGGCCAGTTGCCTATA 1419722 33 100.0 34 ................................. ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA 1419789 33 100.0 34 ................................. ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT 1419856 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG 1419923 33 100.0 33 ................................. CCACATGGACGACCTTGCCGCCGCCGTAGACGG 1419989 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 1420056 33 100.0 34 ................................. CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC 1420123 33 100.0 34 ................................. TTGTATAAAGTCCACCATCTTGACGGCACCTGCA 1420190 33 100.0 34 ................................. ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC 1420257 33 100.0 34 ................................. CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG 1420324 33 100.0 33 ................................. GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT 1420390 33 100.0 33 ................................. CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC 1420456 33 100.0 34 ................................. AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG 1420523 33 100.0 34 ................................. TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA 1420590 33 100.0 34 ................................. ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC 1420657 33 100.0 33 ................................. ATCGTACTTGGGCAGTCCCATATCTTCACAAAA 1420723 33 100.0 34 ................................. AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT 1420790 33 100.0 34 ................................. AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG 1420857 33 100.0 34 ................................. TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT 1420924 33 100.0 33 ................................. TTAAAATATAGTGTTAAATTACATTCATCAAAG 1420990 33 100.0 33 ................................. CACATGGAACATTTACAATTCCAAAAGAAGCCA 1421056 33 100.0 34 ................................. TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC 1421123 33 100.0 34 ................................. CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG 1421190 33 100.0 34 ................................. CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG 1421257 33 100.0 34 ................................. TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA 1421324 33 100.0 34 ................................. CACGTGGAACATTTACAAGTTGAATCCAAAAGAT 1421391 33 100.0 34 ................................. CCCCGTATATTCATCATACATGGGCAATCCCATT 1421458 33 97.0 34 ...................A............. CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT 1421525 33 100.0 34 ................................. CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG 1421592 33 100.0 34 ................................. TGGACCGCAAAGACGGTGCAATTAAGTACACCCC 1421659 33 100.0 34 ................................. TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG 1421726 33 100.0 34 ................................. TGCGTACTCATGGCATGCGCCCGTGTACATGCTA 1421793 33 100.0 34 ................................. ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG 1421860 33 100.0 34 ................................. CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC 1421927 33 100.0 34 ................................. CGTCAAAAACGTGTTGATATCTGCGAGATCATAG 1421994 33 100.0 34 ................................. TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG 1422061 33 100.0 34 ................................. TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG 1422128 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 1422195 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 1422263 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 1422329 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 1422396 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [1422415] 1422465 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 61 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1912167-1910443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025827.1 Akkermansia muciniphila strain EB-AMDK-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1912166 31 100.0 34 ............................... ATCGTATGCGGGCAGGCCCATTTCGCCGCAAAAG 1912101 31 100.0 34 ............................... TAAAAAATAATGATAAATTGAATGCATCAAAGGG 1912036 31 100.0 34 ............................... CCGGCGCGGGGGCCAACATGTCTTGTCCGCTTGT 1911971 31 100.0 34 ............................... CGGACGGCTCTCTATTCTGAAAATCAATCTCCTA 1911906 31 100.0 33 ............................... TTTATCAACTCTAATAAGTTTTTTGTTCATGCG 1911842 31 100.0 33 ............................... AGTTTCCATGATTGTTTCAACTTCTCCGGTGCG 1911778 31 100.0 34 ............................... CACATGGAACATTTACAATTTAAATCCAAAAGAT 1911713 31 100.0 34 ............................... TTTATTGCCTGCGCACAGAAGTGTCCATGTCCAG 1911648 31 100.0 35 ............................... TGTTTGGTTGATTGTTTTGTTCACCGCCCCTTATT 1911582 31 100.0 34 ............................... AAGGTTGTATGACAAATTACAAATAATTAACATG 1911517 31 100.0 36 ............................... CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 1911450 31 100.0 35 ............................... CGAAAGATATAGCGGCGGCCTTTATGCTGACTCCC 1911384 31 100.0 33 ............................... CCTACCAGATGGCCCGCATAGGCATTTCCGCGG 1911320 31 100.0 34 ............................... CCTTTGGAGTGCGTTCTTAACCCGTTTTTTAGCG 1911255 31 100.0 34 ............................... TGCTTGCCCATGCCCGCTTCCTGGAATCGAAATT 1911190 31 100.0 34 ............................... CGGCGATAAGGTTAATGGTTGCGACTACATGGGG 1911125 31 100.0 34 ............................... AGTTTGTCTTTATTCATAGTCTATTGTCTTTCTA 1911060 31 100.0 35 ............................... GTTTACCCCGGGTCCGGTCGGGCAGGGGTGGCAAA 1910994 31 100.0 34 ............................... TGAATGCTACGTCCTGCCAATTCTGGGAGATGAC 1910929 31 100.0 34 ............................... ATGCCCCCCTCCTTTCCACGATTTGAATCCTGCG 1910864 31 100.0 34 ............................... AATAGATAAAAACACTTATAACCGTATCGTGTTG 1910799 31 100.0 33 ............................... AAACGGTGATGGTTCTCTCAAGGCTAGCAACAA 1910735 31 100.0 35 ............................... ACACCGTCTTGTGCAAGTCCATGACGGCGGTATGG 1910669 31 100.0 34 ............................... AAGCTCGCTTTTAATGCGGTTCCCCTGCTTTTTC 1910604 31 100.0 35 ............................... GAGGCAGAAAAGCCAATGCGCACCCATGTTGACGG 1910538 31 100.0 34 ............................... AAAAATGATATAAAAAATATACTAAGGCCCTAAA 1910473 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGTTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCGTTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTCCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAGCGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : ATTCCCGCCTACTTCTACGTCATCCGCTACGAGCGTCGCTGAGGAATGACAGGAGAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGCAGGAACAGGCCAGGCACGAGCTATCTTATAAAAGTCGGAGCTAAAAAGAGGGCAGATGACAGGTATCTGATATAAGTACACAAGCTATGCAGGGATGTTGCACAAGATCTGCAAAGGGTAGGTGATAGAGAAACGACAAGGTAAAAAATCATGATAGGATGTCCCGCATGTGTACACCTGCATATTGCATTCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGAAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAAAGAAGTAAGACGACATGCTGGGTGCGGGATGGTCGCACCCTCACGGGTGCGTGAATTGAAGTTTTATGTATGTTTGACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //