Array 1 132599-130312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000011.1 Actinocorallia sp. API 0066 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 132598 29 100.0 32 ............................. CCGTCGGCATACCTGTCTACCGGATGTGGGTC 132537 29 100.0 32 ............................. GTGGTCGAGGGGCTGGTCGGCGGGATCATGTC 132476 29 100.0 32 ............................. ACCGCCGCGGCACCAACGCCGCCGCCGCCTCC 132415 29 100.0 32 ............................. TGGGCGACGACGTGTGTGGTGGGAGTCCAGTC 132354 29 100.0 32 ............................. GAGACCCCGTAGGGGGTCTCCTCCCAGTTCCC 132293 29 100.0 32 ............................. TCCGCCCCGTGTCCCGCGAGACGGGCCGCGAG 132232 29 100.0 32 ............................. CACGGCGGCTCCCAGTCGGGGATCTCCCGGAT 132171 29 100.0 32 ............................. GTCTGGGATGACTTCACCAACGCCCCCTCCCC 132110 29 100.0 32 ............................. GGAGATCTGCCGTTCGGTGAACAGGGGTGCCA 132049 29 100.0 32 ............................. CCGCCGTAGGTGGACTTGGCCATCCCCTGGAT 131988 29 100.0 32 ............................. AGTGGATCACTCTTCATGGCGAGCCGGGTCTG 131927 29 100.0 32 ............................. TTGGTGCCCTTGCCGATGGTCACGTCGACCAG 131866 29 100.0 32 ............................. CCCCGGCCCAGGCGGGTCGGGGCGGGGTGAGG 131805 29 100.0 32 ............................. ATGCAGCGGGGCGACTCCATCGGGGTCGAGGG 131744 29 100.0 32 ............................. GCCGGGGGGCGAGGAAAGGAGAGTCCCATGAG 131683 29 100.0 32 ............................. CAGGAACGCATCAGCGTCGGCCCGACCATGCC 131622 29 100.0 32 ............................. AACCAGACCCGAGCGGAGCGCGAGCGCGAGGC 131561 29 100.0 32 ............................. CTACTCATCCGCGCGCCGCCGCCTTCTTCACC 131500 29 100.0 32 ............................. CGTGTCGCTCGCTGCGCCCCTGCCTACGCCGA 131439 29 100.0 32 ............................. CAGTTCATCAGCGGCTCCACCGCGCAGTTGGG 131378 29 100.0 32 ............................. GTGACCGCTTACATCCTGATGCGCAAGAGCAG 131317 29 100.0 32 ............................. CTGCTGACCACCTGCCCGGCCGCGTTCCGCCA 131256 29 100.0 32 ............................. CTCATGGGTTCCCCTCGGGTGGCGCGTAGGGA 131195 29 100.0 32 ............................. GGCCTCGCGGAGGCCCTGGCGAACGCCCCAGC 131134 29 96.6 32 ..................A.......... TGGCGGGGGCGGCGTCCGTAGGGGCCGGTCAC 131073 29 96.6 32 ............................A TCATTGCCGGCACTGGGCTGCTCGGCGGCGGG 131012 29 96.6 32 ..................A.......... TGATGCGGTCCGCACGGTCGAGCAGGTCGCGG 130951 29 100.0 32 ............................. TCGCGGCGCTCGTCGCGCTGATCCAGCAGTAC 130890 29 100.0 32 ............................. ATCACCGAGGTTGGGCAGGTTGAGGACGGCTA 130829 29 100.0 33 ............................. TGTGTGACGGTGGTTCCGGCCGGGACCTTGGAT 130767 29 100.0 32 ............................. CGCTGTACGCTGACCGGGCCCAGGCCACCCGC 130706 29 100.0 32 ............................. GCGTAGGGCCACACCACGTAGACGGTTTTGTC 130645 29 100.0 32 ............................. GTGATGGCGTCGGGCTCGATGGTGAGGGCGAG 130584 29 100.0 32 ............................. GTGATGGCGTCGGGCTCGATGGTGAGGGCGAG 130523 29 100.0 32 ............................. CCCTCAAAGGCCAGACCGCCATCCCCACCGAC 130462 29 100.0 32 ............................. GAGACCCGGCCCTGGCCGTCGCGCTGCCAGTA 130401 29 96.6 32 ..........T.................. AACGGCAACAGTTCGAACGCCTCGGTCGCGGC 130340 29 89.7 0 ............T...T......T..... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.4 32 GTCAGCCCCGCGCAGGCGGGGGTCAACCG # Left flank : CTCCTCTCCCCAGACGACGGCACCCGCCAAGACGACGCCGAGGAAGCCTCCGAAGAACTCGTCAACCTCTGGGACCCCGACCACGGCCTCCTCCCCGGCGGCAAGAACTACGACCCCTGGGAGTTCTGAGTTGGCCACCCTGACCGTCATCGCCACCACCGCGATCCCCCAACATCTACGCGGAGCCCTCACCCGCTGGATGACCGAACCCATGCCCGGCCTCTACGTAGGCACCCTCTCAGCCCGAGTCCGCACCGAACTCTGGACCACCCTCTCCGCCACCCTCGAAGACGGCGCCGCCGTCCTCATCCACCCCGCCCCCACCGAACAAGGCTACACCCTCCAAACCGCCGGCACCCGCCGCCGCACCCCCATCGACTTCGACGGCCTAACCCTCATCTCCCTCAGCCCCCAAGAACCCGACCCAGCCCCCACCACCCCCGAACCCTTCCCCCCATCTCAAATCGATAACGCCCCCGAATAGCCCCAGCTCACAAAGC # Right flank : CTCTGCTACCTGGCGGCGTTTACCACCGCGCTGTCAGCTGCGGCTGCCTCGCGAAACTCGGGCGCCAAGTAGGTGTGTCGAGTGAGGTACCGTCGACGGCCATACGCGCTGTTCGTGCCCCTTTCGGCATCTGTTACTGGTGCCCTGTCGTATCCATCTGTGCCGTATTCGCTCTGTCGTGATGGGATCGGGCCGTTGCGGGCCTTCTCGACGTCGGTTAGCCGGTGGGGGCCGGTTGTGCCTGGGTGAGCTTGGTCCAGAGTTCGATTTGCTGTTGGTGTGAGCCGTTTGCCGTGGCGCGGCGAACGGTTTCGGCGGCGAGGTCGTCGGGGTGTCCTTGGCGGGTCAGCAGCGTCAAGGGCCAGACGGGGTAGTGAGGGCCACTCTGGTCGAATGAGTGCCAGTCCCAGGGGCCTTGAAAGTGCCAGGTGCGGCCGTCGGTGTCGGCGATTTCGTCGCCGGGTTCCAGGAAGTCGTAGAGGCGATGGATGCGTTCGATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCAGGCGGGGGTCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 410619-410912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000002.1 Actinocorallia sp. API 0066 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 410619 30 100.0 36 .............................. GAGCGGTGCGCGTCGGTCGGCCCAGTAGTGGGTGAC 410685 30 96.7 37 .........................A.... TCCATGTTTCCCTCTGTGGATTTGTCAATGTGCGGTG 410752 30 100.0 37 .............................. TCGCGAGTCGCCGCGACGCTGAACGACACCGCGCCAG 410819 30 96.7 34 ............T................. GTCTGGGTGGCCATGCGGGCGAGCGCGCGGCCGA 410883 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : CGAGTACACCCCCCGCCGCCGAGGCGCCCGCTCGAACACCGGCCACGAATACCCGAACGGCACCATTCCGTGCCGTCCCCACCCCCGCGAATGCAGCCGAGTGGCAAGCTCCGGCGCCTGACGCTCCAACAACGAGTACACCACCCCCCGCCCCGGCCGCTGCACGGATTCCCAAGCCAACCGCCGAGCCTCCGTACGCACTCCCACCCGAACCCGCACCGCCACTCCTTCCCTAGCCAAACCCTCAACCCCACCGACAAATGCCAGTGCCCCACACAGACCCCTTCGAGCGACTACGTTAGGCGGCACAACACAGACGTATCCTGCGAACAGAAAAACCAGCCCCGACGACCATCGCCGCCAGCCCCGCTCCTTGACACCTCCACAACACCAAGATCTTCAGCACCACACCGGTCTCGCGTGCGCTACCGGAGGTTCGCTGAAAAACACGGCCCAACGCCCCCGCAAACACGGACCCCGACCTGCGCCTTTACCCTGGG # Right flank : CACGGCCACGGCTTCTAGGTGGCTGATGACGCCCTGTCCTCGTCGGGCCTGGCCTGGAGTGCGGCGGCCCGGATCGAGTCGCGGGTGAGGGCGTTGGCGGCCGACGTGCGCTCGCCGGGCACGGCTGTGCCGAGCCCGTCACGGACGTTTCCGGCGTTCATCCAGTTCGCGAAGGCGCACGGTGTGGCGGTGCCGTCCGGCGAGACCGCCGGTCTGCCTGTCCCGCGCTCTCCGCAGAGGTTGGAGGGGTTGCGGGCCCCGCTGTCTGCGCCACGCCCGGAGGGACGGACGTGATCGACGTCGATCCTGGTCACCCCCAGCGCCTCCAGCTCGGCGCGCGCCTGCTCGACCCGCTGCCCGTCGAGGACCTTGACGATACCGACGCGCAGGGGGATGCCGAGGCCGATCGCCTTGATGATGTTGGCACGCGTTCGCGGGTGGGCCGGGCGTCCGGTGATCTGCCGATGTTCGTCGGGATCGTCGGAGTAATAGGCCGTGGC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 413802-414165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000002.1 Actinocorallia sp. API 0066 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 413802 31 100.0 37 ............................... AGAGGGCGAGCTGAAAAGTTGTGTGGTGGTTCTTGAC 413870 31 96.8 37 ........................A...... CGCTTTTGTTCATTTAACTCCTGCACGTAGATATACA 413938 31 100.0 33 ............................... ATGAGCCTCGCTCTTGATCCGAGCGTTCAGACC 414002 31 100.0 35 ............................... ACTCGCCGAGATCTGCGACGGCCTCGACGCTGCCG 414068 31 96.8 36 ............................G.. GAAAGGACGCGACCTTCGCAGGCTGGACGCCCATGT 414135 31 71.0 0 ..G.......T..T.G.A........TGG.T | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 94.1 36 GTCCTCATCGCCCCTATCAGGGATCGCAACA # Left flank : ACGCCCGGAGGGACGGACGTGATCGACGTCGATCCTGGTCACCCCCAGCGCCTCCAGCTCGGCGCGCGCCTGCTCGACCCGCTGCCCGTCGAGGACCTTGACGATACCGACGCGCAGGGGGATGCCGAGGCCGATCGCCTTGATGATGTTGGCACGCGTTCGCGGGTGGGCCGGGCGTCCGGTGATCTGCCGGTGGCATGTCCCATCGGAGTTTCCGGCCGGGCGGCCATCGGGTCGATCGTCGTGGGGGTGCGCACTGCCCCGTGCGGGTGGGGTTAGGTCGATGACGTCGGTGTTGTCGCGTCTTCCGGCGTCAGCGCCTAGGCTGGTGGGCGCCGAGCCCGGACCGGTCGTCGTGGTCCGGCCCTGTTCCTTGACATCTTCACATCGCCAAGATCTTCAGCGGCACACCGGTCTCGCGTGCGCTACCGGAGGTTCGCTGAAAAACATGGCCCAACGCGCCCGCAAACACGGGCCCCAACCTGCGGCTTTACTCTGGG # Right flank : TCCTACCGTAGTCGGGCCTTGCTTGTGAGGTTTTGTGACGTGTTTATTGGCATTGTGGGGGGTGTGGTTGTGTGGGTTTTGCTGTTGTTTCTGTTGGGTCTAGGGGTTGGTTCTTATGTTTTTGGGAGGGAGGGGGGTTGGGGGGTGGAGGAGGGGTGGATTTCGGTGGTGGTTATGGTTGGGGAGTTGGGGGTGGAGAAGTAGAGGCGGAGGCGGTTTTTGGTTAGGGCTAGGAAGCCTTGGAGGCGGAAAGTGGGGTGGGGGGTTTGGGTGGTTAGGGAGTGGAGGGTGGTTAGGGTCTTGTCGGTTTGGGTTGGGGGGGTGGGGGTCAGGGTGGAGAGGTCGGTTTGGATGAAGCGGATGCCCATGATGGTGTGGACCTGGTCGTTGGAGACGAACTGGGGGGTGGAATGCAGGGTGCGGAGGACGTTGATGACGTCCTGGGGGGTTAGGAAGTTGTTGTGGGTGGGGTGGAGGAGGGGGATCTCGTGGCCGATGAC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTATCAGGGATCGCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 415116-415408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000002.1 Actinocorallia sp. API 0066 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 415116 30 100.0 35 .............................. ATGCCGGGCTGCTTACGGCCTTTCTCCACGTCGTA 415181 30 100.0 35 .............................. CGGGTGTCGCGCACGTAAACCGGCTGCGGCTGTGG 415246 30 100.0 37 .............................. CTTACAAATCCCCCCGCTCCCTCGTCTATCGCGTGTA 415313 30 100.0 36 .............................. TCCCGGATGGCTTTGACGCGGGAGCGGAGCGAGTCG 415379 30 86.7 0 ................G.G........G.T | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTCCTCATCGCCCCTATCAGGGATCGCAAC # Left flank : GGAAGTTGTTGTGGGTGGGGTGGAGGAGGGGGATCTCGTGGCCGATGACTTTTTTGGAGGTTTTTCCGATGGGGGGGCCGATGACGACGCGTAGGGCCTGGAGGGGGGCGGGGGACGGTAGGACGCCGCGGATGTAGGAGGACTTGGCGAAGGGGGCCTGGAGGTAGAACAGCAGGTGGTTGGTGATCTCGGCCTGGTGCTTTAGGAAATCCTGGTATGTGGGGCTCATCTGGTCATTTGTGGGTGTTTGGTGTGGATTGCGTGGTTCGGGTGGGGTGTGTTGGTGTTGTCGATGTGCGTTCTGTCATCGTCAGAGCTTAGGCTGGTGAGGTGCCTAGCGCCCGGACCGGTCGTCGTGGTCCGGCCCTGTTCCTTGATATCTTCACATCGCCAAGATCTTCAGCGCCACACCGGTCTCGCGTGCGCTACCGGAGGTTCGCTGAAAAACACGGCCCAACGCCCCCGCAAACACGGGCCCCGACCTGCGGCTTTACCCTGGG # Right flank : TATGGCCAGCTTGTGCTTGCGGCCGGGGGTGATAGGTGCTGGTGGGGATGGAAAAGGCTCCCGGCCTTGGGCTGGGAGCCTTTTTGTTGGGGTGGGGTTAGGGGTGCTTCAGGGCGTGGATGAGGGTGTGGAAGGTTTTGGGGGTGAGGGTTTGGTGGTTGTGGTGGGGGTTTTTGGAGTCTCGGACGCCGATGGCGCTGGGGAGGGGGGCAACTTCGACGCAGTTGCCGCCTTGGGCGCCGCTGTGGGTGGACTTCCGCCAGGCGGGGCGATCACTCACAGGTCCTCCATGATCTGTCGGGTCGGCGATCAGTGTTTGGGGCTAGACGGCCTTGAGGGTTTGGATCATGGTGCGGAAGGTTTTGGGGGTGAGGGTGTGGTGGCTGTGGTGGGGGTTCTTGGAGTCTCGGACGCCGATGGCACCGGGGAGGGGGGCGACTTCGACGCAATCTCCGCCCTGCGGGCCGCTGTAGCTCGACTTCCGCCAGGTGGGGCGACCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTATCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 419213-419444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000002.1 Actinocorallia sp. API 0066 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 419213 30 100.0 37 .............................. CCGTTTTTGTAGTTCGGAGCGTAGACCTCATTAGGCT 419280 30 100.0 37 .............................. ACGTATCCCCCTTCCCGGAAGTAGTAGGAGGTGACGG 419347 30 96.7 38 ........C..................... GGGGAGGTGCAGGTGACGATGTAGCGCCAGGTGCCCGA 419415 30 83.3 0 ........C.....AG..........C.G. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 38 GTCCTCATAGCCCCTACAAGGGATCGAAAC # Left flank : GGGTCGTCCTCGCGTTCCAGCCGAGCGGGCACGAGCGGATCGTCCGGCTGGCCGAGCGGATCGCCGACGCCACCCGCGCCGCCGACGAACTCGTCCTCCTGCCGCCGCACAGCCACCGGGACACCCCGACCGACCACCTTGTCGCGTACCTGCGCCGCCACCACCCGCGCCTGACCGTCGTCGCCGACGCCGCCGAAGCGACCGCCCGGCTCGCCGAACTCGCCCGGCCCGGCGACACGATCGTCACCATGGGCACCGGCGACGTCGCCGGGCTCACCCCCCGACTCCTCCTCGCCAAACGAGCCTCCGCCACCACCTAGCCGCAAAAACCACCAAACCCGACCCGCCCCGACCGCCACCGTGCGACCCTGTTCCTCGCCCCGTCCCCAACCCAAGACTTCAGCGCCACACCGGCCCCGCACGCACGACCGGAGGCCCGCTGAAAAACACCGCCCAACACCCCCGCAAACCCCGACCCCGCCCTGCACCTTTACCCTGGG # Right flank : CAGGGTGGCGTGTTAGTGCGGGTGGATGTCGCGGTTGTGTTCTTACTTGCTCTTGTTGTGCGTAGTGCGTTGTTCGGGTGTGGGTGGGTTTGATCTCTGTCTTGGACTCTCTGGTGGGTGTTGAACAGGCTGGATCGGTTTGGGGTCCTTTGGTTGTTTTTATGCCTTGTTGGGTGGGTCGTGTCTGGTTGGGGCTGGTGGGGGTGGGGGGAGTGTTGACAGTGCTTACATGGGTGGGTAGCTTGATGTGAGCAGCGCAAACATTCCCGACGGGTGAGGAGTAGGCCGATGGTGGCTGGCAAGCATGGGACGGTTGAGGTCGAGCTGGGGAGCCGGGTCGTCTCGGTGCCCAAGGGCGGGCTGTACGACAGGTTCCGGATGGACACCGACCTTGATGTCGTCGCGCGGGATCCGCGCGTCAGCGGGGTCGACTTCTTTCGGAAGTTGCCCAAGGCCAAGGTGGAATCGGCGATCGGGACCACCCTCACGCCGAACTTCTA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATAGCCCCTACAAGGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 358475-359099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000003.1 Actinocorallia sp. API 0066 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 358475 37 91.9 37 ..........A..............A........A.. TCTGGCCGAACTCTCCGACCTTCATGTCCGGGTCCTC 358549 37 97.3 38 ..................................A.. CGGTACTGCCCGATCGACCCGATGCGGATCTCCGCGGT 358624 37 97.3 35 ......................G.............. AGCGGCTGAACGGCAACAAGCAGACCGAGATCCAA 358696 37 94.6 36 ......................G.........A.... GCCGCGGCGCTCGGGGAAGACTGCGGGGATCAGGGC 358769 37 91.9 36 ....................A.G...........T.. GGCAGCGGACGCGAACTCGGTGTGCGCCATGTCCAA 358842 37 100.0 37 ..................................... GCCGGCCTATGGGCTCACCGGGCTCGTACACGTACCG 358916 37 100.0 37 ..................................... ACCCCCACCGCGACTACAGCCACCACCCCGCCTAGAG 358990 37 100.0 36 ..................................... CATCGACCGGCACCGGCTCCTCGTGGCGAGTCCGGT 359063 37 97.3 0 ......................G.............. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 37 GCCGCAATGGGGACCGGCCTGGATGGGCCGGTGACGG # Left flank : CGGCGCCTAGCCCGCTCCCGCAACCAAAACCCCACCCCCACAACCACCAACCCCACCAGCCCCCCAAGCACCACCAACCACACGCTCTTATCGGCCTCCCCCGTCATCACCGACTTAGCCGCCTCCACCACAAACCCCCCAGCCAATGCACCCCCACTCCCAACCAACGCCGTCCCGTCCCTGAACAACTCCCGCCACCCCGCCACCACCCGAGGCCCACCCCCAGCCCCCACCACCGTCAACCGAGGCCCCTCCCCAATGTTCAAGATCGCCATACCCAACCCCTCCTAGATCTCCCAGACATCCGACCCGCCGGACGTCCCACTCTCTCCGATGGACGAACCCACGTGAACCGATCCGCCTCTTTCACCAAATCCCACCCCGAACCCAAGCCCCCCACTATGCCCTCACACAGGTCCAACACGCCCCCAAACGCGGACCGCCCCGGAAGGACCGGCGAACGCGACGATTACCGCCAGCTCGTCTATACCCGACACAAA # Right flank : GGGCGGATGAACTGGGGTTACTACGGGGGGTGAGGTTGAGGGGGCGAGTCTGTGTCGGGTTTGTTGTTTTTTGGGGTTGTTTGGGGTTGGGAACCGTCTAGGGATTCTGTGGGGGCTTGGGGTTCCGGAGTGGGGGTGGGGGCCAGGGGGTGGGGGTGAGGGGGCCCAGGCTTTTGCGGAGGGGTTTGCGTTCGGCGGCGGCGAGGGTGAAGACGGTGAGGTTGTGGAGGGAGGGGGCGTTGGTGGTGGGGGTGATGTGAGGGTGGTTGAGGAGGGTTTGGGTTGGGGTGAGGGTGAGGGGGTGGGTCCAGAGGGGCCAGATCATGAGGTAACGGTTGTTGTGGTGGTGCCAGAGGGTGCTGAGGGTGCGGTGGCCGTCGCCGGTCAAGGTGAAGAGGGGGAGGGTTTGGGTGGCCAGCCAGGTGGCGCCGGGGACTCCTCGTTCGGTGGACTGTCCTTGGGGGTGGTGGGCGGCGTCGTTGATGACGCGGTGGTCGAGG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGGGACCGGCCTGGATGGGCCGGTGACGG # Alternate repeat : GCCGCAATGGGGACCGGCCTGGGTGGGCCGGTGACGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 546566-546927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000003.1 Actinocorallia sp. API 0066 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 546566 30 100.0 37 .............................. ACCTCTTCGGCGACGCGCGTCTCGTCCCAGTCCGGGT 546633 30 100.0 37 .............................. GATTTATAAGCCCTTCCGCCAGGGCTTGGAATTCGTC 546700 30 100.0 37 .............................. GGAAACTCCGACCAGCAAATAGACAGCGATTCGTCTA 546767 30 100.0 35 .............................. GTCAAGACCGCTCCGCCATGTCCGCAAGTGACGAT 546832 30 93.3 35 ........C........T............ TGCAGCCGACGACCGACTCCCCGGCGCCGCAGCTC 546897 29 86.7 0 ........C......G..........-.G. | G,T [546916,546921] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTCCTCATAGCCCCTACAAGGGATCGCAAC # Left flank : TGGGGCGCCTCGCACCGTTGGTGTCGTCGGCACGCTTGCACACGTACCTAACCGAGATCGCGGCTCTCTCGGGTCCATGGAAGGACATTCCCGAGGTACGAGCCATGCGGGAACAACTCCGAACACTGCTGACCTAGCAAGACACAAGTCGAACCCAGCATGGACCTCGTGAACGTCAGAGGTCCACTGTCGGTGACATGCCCCACCGGAACTTCCGGCCAGTCGGCCATCGGGCCGCTCGTCGTGACGATGCACACTGCCCCGTACGTCTCGGGGTAGGCCGATGACGCCGGTGCTATCGCCTCCCCCGCCATCAGCGCCTAGGCTGGTGGACACCAAGCCCAAACCAGCCGCCGCGATCCAGCCCCGTTCCTTGACATCTTCACATCACCAAGATCTTCAGCGCCACACCGGTCTCGCGTGCACTACCGGAGGTCCGCTGAAAAACACGGCACAACACCCCCGCAAACACCGGCCCCGACCTGCGGCTTTACCCTGGG # Right flank : CCTGTGTTGGGCTGTCCCGTGATGCGTTCTGCACGATAAGGATCGGTCAGTTGCACTGGTCATCGGCGGTCTGGCCGCCTCCGTTGGACTCCGATCGGCTCGTGCTTGGGTTCGGCTCGGGGTGGGCGGGTTGGGCGGGGGCACAGAGGTGGGGGTGGGGGGGTTCGTTGGGGGGTGGGGGGCGAGTAGGTTCCGGGCAGGAGACGGGTGATCGTGGGAGGTTGTGGTGACGGGTCAGGGTGTTGGTGTTGTTCAGGGGGACTGTGCGGCGGGGTTTGAGGGGGTTCGGGAGGCGTTTGAGGGGAGTTTTGTGGAGAGGGGGGAACTGGGGGCGGGGGTTGCGGTTCTGGTTGAGGGGGAAGTGGTGGTGGATTTGTGGGGTGGGTGGGCGGATGAGGGGAGGAGTCGGGTTTGGGAGCGGGACACGGTGGTGAACGTGTGGTCCACGACCAAAGGGGTGACGGCGCTGTGTGCGCATGTGCTGGTGGAGAGGGGGTTGT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATAGCCCCTACAAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 143485-144437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000012.1 Actinocorallia sp. API 0066 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 143485 28 100.0 33 ............................ CCGCGAGGACAGCCGGCGCCGGGCGGACGCCGC 143546 28 100.0 33 ............................ CAAGAACCTGGCCGGTGTGAACGCGCTGCACCT 143607 28 100.0 33 ............................ GACCTCGTCCGTCGGCAGGGCGTCCAGCGGCCA 143668 28 100.0 33 ............................ GGCGTCAGCGGTGGCCTTGTCCGATCCCAGGAT 143729 28 100.0 33 ............................ GAGCTGGACGTTCTCCGGCTCCTGCCACCCGTG 143790 28 100.0 32 ............................ GGCGGAAGGCCACCCCTGCCGAGAGGTCGGGC G [143811] 143851 28 100.0 33 ............................ TCCACGTCCCCACCAGGCCCGCCGCGGCCACCG 143912 28 100.0 32 ............................ CACGATGATCAGGGAGGACGTGCCCGAGGACC 143972 28 100.0 33 ............................ CCGGCTACGGTCTGCCCCGGACGACCCGTCCGG 144033 28 100.0 33 ............................ GGAGACTGACCATGATCGACTCCGTGATCCGGA 144094 28 100.0 33 ............................ GAAGACGGGCAGCTCCTGCGCACCGGCCTCGTG 144155 28 100.0 39 ............................ GGGGCAGCGCTGCGGCGAGCGCGGCGTCGGCTCCTCGCA 144222 28 92.9 39 .C...A...................... GATTTTGGGCAGGGCGATGACGATCGCGACCGCCTTGCT 144289 28 89.3 33 .C...A..............A....... CGCCGCGTTCGCGGCCGCGAACGCGACGCCGGA 144350 28 92.9 33 .....T....T................. CGACTACGACGAGACCGTCACGATGGCCACGAG 144411 27 92.9 0 .................-A......... | ========== ====== ====== ====== ============================ ======================================= ================== 16 28 98.0 34 CTCGCCCCCGCACCCGCGGGGATGCTCC # Left flank : ACATCAACACCCGAAACGCCCCCGGCAAGAACTTCACCCTCCACCCCACCCCCTAACCCCTCCCACCCTCCTCCCACCCCCCGGACGGCCTTCTCTTCCCCCGCAGAAGGCCGTCCCCCCAATTTCCCCCCAGCCCCACCGCCCCCGCCCCGCCCCGCCGACCAGCCAACAACAGACCCGCCACAGAGAACCACCCCACCCCCAACTAGAAAAAGCCACCCCGTCCGCCCAACCCCACCCCACCTTTTCGCCTTCCCCGCTGTCCCCCGCCAACAAGCACGAACAGGCACACGACGCTCCCTGTCCGGTCGCTTTCCGACCTCGCACCCACATGCCTGCTGCCCGACGCTCCCAACTGCCAGCGGCAGTACAAAGGTTCAGACGGCGAAAGGCTCAAAGCCCCTCTGGCAGATGCCCACCCGTAGCCAACCACCCCCACCACCCGAGCCCAACCGAATAAGATCCCCCCAACGCCCCAAAGAAACCCCAGGCCAACAAGC # Right flank : CGGACAGTACGTCCTCAGCTGTCGAAATCGTGGAAGGCGCGGCCGTCTCTCGAAGGCGATCGTCAGGTCAGCGGTGAGGCCGTTGCGAGGCTGACGTGAGCCCACGCCGCCAGCCGATGATGCTGATCACTTCCCCTTCCCCATCGCCATCGCGACCCAGAACAGAACCAAAGCGATCAACCCTGCCCCCACCACCCCGAGCCCCAACCGAATAAAATCCCCCCAACGCCCCAAAGAAACCCCAGGCCAACAAGCCTCGACCCCGCACCCGCGGGGATGCTCCCGGGATGGGCCGGTCGATCCTCGCCACGTTCACCTCGACCCCGCACCCGCGGGGATGCTCCTCGCGAACGCGCGCTCGACCTGCCAGAACGGGCCTCGACCCCGCACCCGCGGGGATGCTCCGTCCAGCGGCTCCTACGACGGGTGGGGCGAGGACTCGACCCCGCACCCGCGGGGATGCTCCGATCGACCTGGAGCCCGGACAGCGCGGGAAGCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144692-145146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000012.1 Actinocorallia sp. API 0066 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 144692 28 100.0 33 ............................ CGGGATGGGCCGGTCGATCCTCGCCACGTTCAC 144753 28 100.0 33 ............................ TCGCGAACGCGCGCTCGACCTGCCAGAACGGGC 144814 28 100.0 33 ............................ GTCCAGCGGCTCCTACGACGGGTGGGGCGAGGA 144875 28 100.0 33 ............................ GATCGACCTGGAGCCCGGACAGCGCGGGAAGCG 144936 28 100.0 33 ............................ CGTCGGGCAGCTCCTCACCGAGTCCCCGATCGC 144997 28 100.0 33 ............................ CCGCTACGAGCCCGCCCACCGCACCCAGACCCA 145058 28 100.0 33 ............................ GGTGACCGGAACGCCCGACCTGTCCGAGGAGTC 145119 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 CTCGACCCCGCACCCGCGGGGATGCTCC # Left flank : CTGCGGCGAGCGCGGCGTCGGCTCCTCGCACCCGCACCCGCACCCGCGGGGATGCTCCGATTTTGGGCAGGGCGATGACGATCGCGACCGCCTTGCTCCCGCACCCGCACCCGCGGGAATGCTCCCGCCGCGTTCGCGGCCGCGAACGCGACGCCGGACTCGCTCCCGTACCCGCGGGGATGCTCCCGACTACGACGAGACCGTCACGATGGCCACGAGCTCGCCCCCGCACCCGCAGGATGCTCCGGACAGTACGTCCTCAGCTGTCGAAATCGTGGAAGGCGCGGCCGTCTCTCGAAGGCGATCGTCAGGTCAGCGGTGAGGCCGTTGCGAGGCTGACGTGAGCCCACGCCGCCAGCCGATGATGCTGATCACTTCCCCTTCCCCATCGCCATCGCGACCCAGAACAGAACCAAAGCGATCAACCCTGCCCCCACCACCCCGAGCCCCAACCGAATAAAATCCCCCCAACGCCCCAAAGAAACCCCAGGCCAACAAGC # Right flank : CTCCGCCAGGAGCAGTTAGCGCAGGTCTCTCAGGAACGTCTCCTCGGCATTCATCGCGCCGAACGCCTGTCATGACGAAGGTCCCGCATCTAACGTGGAAGTTGTCGAGACTTCACGAGAGGACGGGACCCATGCCCGATTCTAATACCAGCATCGGTGGTCGTGTGAAGGAACTGCGCCGTCGTCACGCCCTGAGTCAAGAGGCCCTCGCTGACGCTGCGAAAGTCAGCGTGGCGGTCGTCCGCAAGATCGAGCAGGGCGGCACCGCGCGGATGGAGACTTACCACGCGCTTGCCCGGGTGCTCGGTGTCCGGACCGTGTGGTTCGCGAACCCGGCCACACCCGCGCCCGCCGAGGCTGCGCATGATGAGCTCCTGCTCGCGGACATTCGTTCGGCGATCATCCCGCCGGTCGACATCACCGGTCGGCCTATGCGGCTGGGGTACGACACCGTCGATGCTGACACCGCAGACCTCCGTCGGCTGCGCACAGCGACTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGACCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 161352-162294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJLQY010000012.1 Actinocorallia sp. API 0066 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161352 28 100.0 33 ............................ CAGGCCGGGCAGGCCGCCTGGAACGTCCTACGG 161413 28 100.0 33 ............................ CCGGGACACCGGGCAGGACGCCGCGTACTGGCT 161474 28 100.0 33 ............................ GACCACCACGTCTACGAACTTGGCGTACGTGCT 161535 28 96.4 33 .........................C.. CGCCCAGGGCGTCATGGGCGACACTGCCCAGGC 161596 28 100.0 33 ............................ CCATCGCCACCTCCTAACCCCGATGCGCCACCG 161657 28 100.0 33 ............................ GTCCTGGTGCCCCGGCCGAGCCCAGCCGACGAC 161718 28 96.4 33 ..............T............. GGAGACGAGTGATCGAGACAGACCGCATCGTTG 161779 28 100.0 33 ............................ GGCGACCGGCATGTGGGGCAAGAAGGGCCCGCC 161840 28 100.0 33 ............................ CTTTGCATCTACGGTCGTAGCCGCGTCGTAGGC 161901 28 100.0 33 ............................ CTGGGTGGTCGCTCGCGTCCAGACGGCGGTGCG 161962 28 100.0 33 ............................ CTCAACGACCGGACCCGTCGCCTGCTGGGCCTC 162023 28 100.0 33 ............................ GATCCGAGTGAGCGCGGGCAGGGCGATGACGGC 162084 28 100.0 33 ............................ GCCCGCGACGTCCGGCCGGTTCGGGTCCAGAAC 162145 28 96.4 33 ........................T... GGGCGGCGAGGCCGGAATGGCGGCCGCCCAAGC 162206 28 96.4 33 ..............T............. CAACATGTCCCTCGCGGGGACCTCAACGTACGG 162267 28 85.7 0 ..C.A.....T.G............... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 33 CTAGCCCCCGCACCCGCGGGGATGCTCC # Left flank : GTTCCCGATCCCATCCGGCCTCGGGAAGGATCTGACGCAGCAGGTGAGCCCCCGCCACGTCATGCCGGTACCGCTCGTGCCGAAACTCCCGCCAGCCGAGCCCCGCGTCACGCACCGCCTGCGCGGCCGAGTCATCGATTCGTTGAAACGCGGGAGTCGCCTTCCCGCAGTCATGCACCCCGCACAGCCAGGCGAAGAATCTCCGCCCCTTCCCCGGCCCACCGGCGATAACGTCAAGCCGTTCCCGTGTCGAGGCCGCGAGGTACCGGTCCCACATGACCTCCGCCACCGCCGCCGTATCCAACAGATGACACAGCAGCAGATTGACCCGTCCCCCCGCCCTACCCGCCGACTTCCCGAACAACACCCCCAAGTACCGCCGCACAACCTCTCCCTCACTAGACACCCCGCCACCCCCAACCTAGAACCCCCCACCCACAAACCCCCGCCCACCGAATAAAATCCCCCCACCACCCCAAAGAAACCCCACGTCAACAAGC # Right flank : CGACTTGTGCTATCCAGGCTGTCTCTGCGGTTGCCCTGGCCTTGCATCTGTGGTGGCGGCGGAGAGGTTTGGGTGTATTGCGGTGTTGATCTGCGTTTGTCTGGTTGTGGCGGGGTTGGGCTGTGGTGGTGGGTTTCGGTGGTGGATCGGTGGTAAATGATCTAGAGCCATGTCCGTGTGGGATCATGGCTCTGGGCTGGGGTTTGGAGCGGATGACGGGAATCGAACCCGCGTAGCTAGTTTGGAAGACTAGGGCTCTACCATTGAGCTACATCCGCGTGGGCCTTTGGGGCCGAGGGATAGGGTACAGGGTTTGGGTGGGTGGGTGGTACTTGGTTGGGGACAGGCGGACAGGGGGCTAGGGCTGGGGCTGGGGTGGTGGGGGATTGAGGGGTGAGAGTTGCGGGTGGGGGAGGGATTTGTGGGTTTGTTCTAAAAAAGGGGGTGGGGGCTTGGGGTTTGTGCGTGCGTTTTTGAGGGGGGTGCGTGTCACGATGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAGCCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //