Array 1 333251-331025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTF010000002.1 Streptomyces olivaceus strain xian7 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 333250 28 100.0 33 ............................ CACGGCGGCCGCCATGAAGACACCGGCAGCGAG 333189 28 100.0 33 ............................ CCGGCGGCCCTTCCAGCCGCAGAGGCGGCACTC 333128 28 100.0 33 ............................ GGGGGACGTGTCCCCCGCAGCACGCGGAGGCGC 333067 28 100.0 33 ............................ TTACGGAGCGGTCCGAGTCCGCGCCCGGTCGGG 333006 28 100.0 33 ............................ GGCAGTGGCGAGCAGGGCGGTAGCAATCCGGTT 332945 28 100.0 33 ............................ TCCGGTCGCCACACCTATGCATCACGACCTCCG 332884 28 100.0 33 ............................ GTACCGGGCGGCCGAGATCATCGTCGTGTGGGC 332823 28 100.0 33 ............................ CCCGTCCGCCCAGATCACCGCCGTCGAATACGA 332762 28 100.0 33 ............................ GTCCACCACTGCCTCCCCCAGGTCGTTTCCCCC 332701 28 100.0 33 ............................ GCCGCAGCCGCGTTCGAACCACGCGGCGACCGA 332640 28 100.0 33 ............................ CCCAACCCGGTCCAGTGCCTGTTCTGCGGCGGT 332579 28 100.0 33 ............................ CATCAACCCCGGCGACGTCACCGCCGGCGGCGG 332518 28 100.0 33 ............................ CTCGCCGAACAAGCTGGACAAGGGCAGCACGAA 332457 28 100.0 33 ............................ TCAGGCCCTCGACGCCATGACAGGCGTCCAGTC 332396 28 100.0 33 ............................ GCGGAAGGCCACTCCGGCGTCCGAGTCCACAAA 332335 28 100.0 33 ............................ CCACACCAGCCACTGGTGGGTCGGGGGATCCCT 332274 28 100.0 33 ............................ GGTGATTGAGTACCTCCGCCAGGACGAGGACGA 332213 28 100.0 33 ............................ CTGTCGGCGTACGCCTTCCCTCCGATGCCGGCG 332152 28 100.0 33 ............................ GTGGGACATCCTCGACCCGATGGCCGAAGCCAT 332091 28 100.0 33 ............................ GTCGGTGGTCCGCTTCAGCCCGTCGGCCTTCGG 332030 28 100.0 33 ............................ CCCCCACCCCGGCCGGACGGGCGCACCGGTACT 331969 28 100.0 33 ............................ TCGTGAATTACCCCCAGGTTCACCTCCTCGCCG 331908 28 100.0 33 ............................ CGCGGCCACGAACTCCGCACCGCCCGCAACTTC 331847 28 96.4 33 .........A.................. ATGACCCCCGCCTCGACCATTAGGTTGCGCAGG 331786 28 100.0 33 ............................ CGCGTACAGGTCCTTGATCCACTCGGCTTCCGA 331725 28 100.0 33 ............................ GACGCCGGACTGTCGGTCGGCACGATCAGGAAG 331664 28 100.0 33 ............................ CTGGCCGCCCGCGCCCGGCTGCCCTGAGGCGAC G [331642] 331602 28 100.0 33 ............................ GTTGCTCGGGGCGGCCGCCGACCGCGGTACCGG 331541 28 100.0 33 ............................ CGGGCCGGACGAGAGGACCAGGGCGGCCTGGTC 331480 28 100.0 33 ............................ TCCGCATCCAGGCGTTCCTTGCCGAGGTACGTC 331419 28 100.0 33 ............................ GGGCAGCACCCTGACGCTGCCGCTGACCGAAGC 331358 28 100.0 33 ............................ CTTGCTCTCCCCCCGCGCGATCAGCAGCCCGTC 331297 28 100.0 33 ............................ TGCCGGCGTCGGCCACACCGCGGGCACCCTCGG 331236 28 96.4 33 .................A.......... TGGAGTTGTGGGACTACCGGATACGACTCGTAT 331175 28 96.4 33 .....................A...... GACCGTCACGGTGCTGAGCATCGCGTACGCCGG 331114 28 96.4 33 ...T........................ CGAGGACCCCCTATACCTGCGGGCCATCGCCCC 331053 28 75.0 0 ...........G.........ACGACC. | C [331031] ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.9 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : CCCCCATGCGCCCCAACGGCAGCCCCGCCGCCAGCACCGGTGCGGCCTCGGCCGCGTCCATGGCCTGGAACGCCGGGCATGCCTTGCCGCAGTCGTGGATGCCACACACCCACATGAACCAGAGCCGCCCCCGGCCGCCGCTGACCTCGTCCAACCGCCGCCGGAACGCGGGCGCCACGTACCGGTCCCACATCACGCCGGCCACGGCAGCGGTGTCCAGCAGGTGCCCCAGCAGAAGATGCGTTCGACCGTCATTGCGTGCGGCAGACTTCCCCCACAACCGCGACACCCGCTGGACGACCTCGTCGTCCAACTCCATCGCCCGCATCAACGCAACGACCGACCGCTCGTCCTCCACGCCCCGCTCCCTCCCCTGAACCGAGCCGCATGCGGCTAGTTGTGAAGGAACCGTAAACGGTGCCACTGACAATGCCCTCCCGGGCCAAAACGAAGTGAAGGAAAACAGGTACCCTCCCTCACATCACCGCAGCTCACGAAGT # Right flank : CTTTCCCCCGTGCTGCGTCTCACATACCTGTTGCTCGACACGGAAGTTACCGCGGCAGGGCCCCGCCCCTGGCGCGGACGCCGGTCCACTCGCACCACACCACCTTGCCCGGTGACCGTTCCGCCACTCCCCACTTGTCGGCCAGTTCCGACACCAGCAGCAGTCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGGGGTACGGCTGGCACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGCAGCAGCCGCAGCAGGAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGCGCGTTGGTCGCCAGTTCGCTCACGCACAGCGCCACGTCGTCCGCGCGCTCACACACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAACGCTCACGTGAGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGAGTCACGCTCCGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 343743-344136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTF010000002.1 Streptomyces olivaceus strain xian7 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343743 28 100.0 33 ............................ CTCGATTGCGGCACCCGTTTTCGACGGGGACAG 343804 28 100.0 33 ............................ GCGGGACACCGAGGATGCCGTGCGGTCCCGCAT 343865 28 100.0 33 ............................ ACCATCGCGAGCTTCGAGTACACGGGGCGTAAG 343926 28 100.0 33 ............................ CCCGGGTCTGCATCGACGACGACTTCGGACCGT 343987 28 89.3 33 ..T....................T.C.. CCGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 344048 28 85.7 33 .............T.A..T......C.. GGAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 344109 28 75.0 0 ....C..A.............ACG.CC. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.9 33 GTCGTCCCCGCGCCTGCGGGGGTAGTTC # Left flank : GGCAGCGACCTGCTGGACGAGGACCTCGGCGCCCTCTGGGACGACGGCGACACCGTCGTCAGCGGCGGCCGCAACTGGAGCGCCACGCACCACCTCGACATCATCCCCGAACCCACCTCCGCAGAGGCGGCCCCGTGAGCGCCGGAACGACCGTAGTCGTACTCATCGCGGCCCCACCCGGCCTCCGCGGACACCTCACCCGCTGGTTCGTCGAGGTGGCCGCCGGCGTCTACGTCGGTAACCCCAACCCCCGCATCCGCGACCGCCTGTGGAGCGTCCTCGCCGAACGCATCCACGACGGCCAGGCCGTCATGATCGAACCGGCAGCCACCGAACAGGGCTGGTCGGCCCGCACCGCCGGCCGCGACCGCTGGACCCCCGTCGACTTCGACGGCCTGACCCTCATGGCCCGCCCACGCCAGAACGGACAACCCTGGCGGCCCACGAACGAGGTAAAGCAAAACGGCATGATCACCTGACAAAACACCAGCTCACGAAGA # Right flank : CCTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATACGGCTCGGTTCGGTGAGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAACACGAGCGCCAGCGGTGTCTACGCGACTGGCCGTTTGCTCGCCGCTCGCCGCCGTCCGCGGCATCTCATCAATCGCACTCGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTTGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //