Array 1 4357-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFJ01000087.1 Porphyromonas gingivalis strain AFR5B1 isolate AFR5B1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4356 30 96.7 36 A............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAGC 4290 30 100.0 35 .............................. ACATCTCCGGCGGACTTCGGATGGAATGAAATCGG 4225 30 100.0 35 .............................. TCCGCCATGGCCCTCTGCGAGGTATAGCCAGAGGA 4160 30 100.0 36 .............................. GTGTTGCCTGTCAGCTTCGCGAGTACGAGGTTGTAG 4094 30 100.0 36 .............................. ACGGTTCGGGCTTGTGACAACGCAACGGTTCGGGCT 4028 30 100.0 36 .............................. AGCACTTCCATATCTCCTTGCTGGGAGATACCATCA 3962 30 100.0 37 .............................. GCTGATGACATTCCGCTCCTTCTGAGGCAGACGGTTG 3895 30 100.0 35 .............................. CAGTTCCGCATCGCGCACCAGCACCTCGGCATCGG 3830 30 100.0 36 .............................. TCTTTAGTGTAAGGAAAGTATAAAAAATCAGTCCCC 3764 30 100.0 37 .............................. TTCCGCGCGGGCCTTGCCCGCCTCTGCGTAGAGCGGC 3697 30 100.0 34 .............................. GTAAATCGCCAGTCGGGGACATGCTCACCGGTTA 3633 30 100.0 36 .............................. ACTTATACTCGTTGAGTATCTGCTTATCCGCGAGGA 3567 30 100.0 34 .............................. CCGCTGTTACAAACCAAGATAAGCGCACAAGCGG 3503 30 100.0 36 .............................. CGCATTACTATTTAGACCTGCCCAACCCGGTGGCCG 3437 30 100.0 34 .............................. TAATCCCACTCGTAGAGGTTAGGCTTATACCCGA 3373 30 100.0 35 .............................. AAGAAACAAAGTCCAAATAAATCTTCTTCTACTAT 3308 30 100.0 35 .............................. CTTCCTGGATAATTCTAGATTAGGAGCTCGACTTA 3243 30 100.0 35 .............................. TAGATGATTATGTTGAAAAAGAAGGAAAAGACTCC 3178 30 100.0 36 .............................. TGTGTATAAAAACACAGCTATGTTGTTACAAACAGT 3112 30 100.0 36 .............................. TACTCACGACGTAAAAGATAATAAGATTTATCGTGA 3046 30 100.0 37 .............................. TCACGACTATTTTAGTTCAGTTGTTACACAAAAACCT 2979 30 100.0 36 .............................. AATTAGCTACAAGAATAAGCGAGAGTATAGATATAA 2913 30 100.0 36 .............................. CTTTTTGAGCATTATATAAATAAGTATATAGATTCT 2847 30 100.0 37 .............................. TTAGTTCCGTTGTTACCCAAAAAAAGCCCTGGAAATT 2780 30 100.0 36 .............................. TGTGTTAACACTACATACTGATGATGTTTCTAATGA 2714 30 100.0 35 .............................. AATTTAATTGATAAAGAACTACAACGAACCGATAG 2649 30 100.0 37 .............................. TATAATCAAACACAATTCGATCATCTTCGATATAGAG 2582 30 100.0 35 .............................. TGCCCTGCAGCTTGAAAAAGCGCTGCAAAAAATTA 2517 30 100.0 36 .............................. GGCTATCCCCTCCCAAACGGCCCACGCCTTTGCGGA 2451 30 100.0 37 .............................. GGCGTCCGCTATCTCGCGTGTGTAGAGATACTCACGC 2384 30 100.0 37 .............................. GACCATCAAGCGGGCCTTCAAGCATAAGTTGCGTTTC 2317 30 100.0 35 .............................. TCTTCACCCGAAATCGTCTCGTTCAACAACGCGAT 2252 30 100.0 36 .............................. GACGAGGTCTTTAATCGCCTTGCCGTCGAAAATTTT 2186 30 100.0 36 .............................. GACGAGGTCTTTAATCGCCTTGCCGTCGAAAATTTT 2120 30 100.0 35 .............................. TTTCGCTCAGTACGCCCGCCGGCGTGATAGGTTTA 2055 30 100.0 36 .............................. AGCAGCTTGCCTGTCATGTCGCCCATCACCATGAAG 1989 30 100.0 36 .............................. AGAGATCGCAGCTTGAGCACAGAGATGCTGTCCGCC 1923 30 100.0 35 .............................. TCAAAAGAAGAAAGCAGACTTGAGGAAGCGGTTTA 1858 30 100.0 37 .............................. CGTGATCAAACGCGCACTGAACGATCAGTTGCGCTTT 1791 30 100.0 36 .............................. AACGCTGATACGGTCGTGCAGTTTTTAGAGATTTCT 1725 30 100.0 36 .............................. ACAATACGACAAAGAAACAATAGCAGAATTGACGCA 1659 30 100.0 35 .............................. ATTCTTATGCTACTACAATGAACAATCAGAAGAAT 1594 30 100.0 36 .............................. TGTTTATATATATAGCGACTTCATGTAAATAACATT 1528 30 100.0 36 .............................. CTTTTTGAGCATTATATAAATAAGTATATAGATTCT 1462 30 100.0 37 .............................. TTAGTTCCGTTGTTACCCAAAAAAAGCCCTGGAAATT 1395 30 100.0 36 .............................. TGTGTTAACACTACATACTGATGATGTTTCTAATGA 1329 30 100.0 35 .............................. AATTTAATTGATAAAGAACTACAACGAACCGATAG 1264 30 100.0 37 .............................. TATAATCAAACACAATTCGATCATCTTCGATATAGAG 1197 30 100.0 36 .............................. CGAACCGATAGTGGTATAGATGTAGATAAGTTTCGT 1131 30 100.0 35 .............................. AAACGAGCTCGCGGCGGGTAGCCGTGCAGGTGGCG 1066 30 100.0 34 .............................. AGTTGATCGCGCTTATCAGCTGCGTCTTGTTCGT 1002 30 100.0 36 .............................. AAGGTATGACAGACGCGGAGTGGGACGCTTATGCGT 936 30 100.0 36 .............................. ACGATAAGAGTTTAGAAACAATCTTTAGAAATCATT 870 30 100.0 34 .............................. TAAATACTTCAATCAAACAATATCGAATGAAGTG 806 30 100.0 36 .............................. AGTATCTAGCTAAATCAATGAGTTTTCATCATAGTT 740 30 100.0 34 .............................. TTGAATGATATAACTACTTGCATAGATATATTTT 676 30 100.0 36 .............................. AGCCGCATTACTATTTAGACCTGCCTCACCCCGTAG 610 30 100.0 35 .............................. AACTGCCTGCTTGTCTCTATCCATGTCGATGCCGC 545 30 100.0 35 .............................. CAGGACGGTATACATGACCGTACCCTCGTCCCTTC 480 30 100.0 36 .............................. CTTGCACAAGAGCGTCCGCCATTTGATTTACCACGA 414 30 100.0 36 .............................. CGAATACCCGCAGATTTGAAAGGTCACCGAATTGCG 348 30 100.0 36 .............................. TTTTGCCGTTTCCCTTGCCGTCCTCTTGTGGGATGT 282 30 100.0 36 .............................. TCCTTTACTCGAAAATCAATAACAGCTTTAGAGTTT 216 30 100.0 36 .............................. TCATCTATCTTAAAGCGAGAGAAAGAGAGCTCCTCT 150 30 100.0 37 .............................. TGCCGGACGCCATCAACGACCAGATTATGCAGCTGAT 83 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 66 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATA # Right flank : TTGTACTCGTAGGGGTCACCCAAGCGGATATGTCCGGTTTTAATTCCTGTATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 54-2784 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFJ01000075.1 Porphyromonas gingivalis strain AFR5B1 isolate AFR5B1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 54 30 100.0 35 .............................. TCGTTTGAAGCGCGGTGTTGATAGCGCCTATCAGC 119 30 100.0 37 .............................. AAAATCCGCTCTTCGGACTCATAAAGGCAAAGTTTAA 186 30 100.0 37 .............................. TTGGTCGGGCCTGCGCCCTTGCGCGTATAGATGCTGA 253 30 100.0 35 .............................. TTCATCTGCGTGCGTTTCGCTTCCACCCATGCGTT 318 30 100.0 34 .............................. CAGATACCGACGCACTTCGTCGATGCTGCTCGCA 382 30 100.0 36 .............................. TACACTCCGCGAGGCGGTCGGACTTAGTCCTCCCAG 448 30 100.0 36 .............................. AAAACATTCTGTCAGACCCAATACTCGCTCCAGTAT 514 30 100.0 36 .............................. CGGTTCTTTTTTTCAGGGGATAAGGCTGCGATGCTT 580 30 100.0 37 .............................. AATAAAATATCATGATTGAAAATTTTATCGAGTTTAA 647 30 100.0 36 .............................. AAAAGGCGAGTCTCTTTGCTTTGAATGTTTCGTTGT 713 30 100.0 36 .............................. GGGCTGCCTTATCGGCCGTCCGGATGCCCTTGCCCT 779 30 100.0 37 .............................. GTGCGATCGCAACATCCTCAAACGCCGTCTTCACGTA 846 30 100.0 35 .............................. GTCGATTGTGCTCGCTCAAGTATTCGTATATCTTC 911 30 100.0 36 .............................. TAAGGACTACCTCGCCAACCTCCGCGCGCAAACGCG 977 30 100.0 35 .............................. TCTTAAGCATCAAGAAAAGGAGCAGAAAGAATTCG 1042 30 100.0 36 .............................. GATACGGAGCTGTCCCGTATCTGTCCCGCCTTTTCA 1108 30 100.0 36 .............................. TGTCCGACGAAGGCGTGCTCTACAACCACAACGCAG 1174 30 100.0 35 .............................. CGTCATCACTTGACGTAGTTTCGTGAGAATTTCGT 1239 30 100.0 37 .............................. ATCAGTACGATCTGCAGGAGCTGGAGATACAGACGCT 1306 30 100.0 35 .............................. TATATCAATCGCCGCCTTCGACCAACGATACGTGT 1371 30 100.0 36 .............................. GCAGGGTAAATTCTAAGGTTAGTCCGGAATTTAGAG 1437 30 100.0 36 .............................. AAGAGGATTTAGTTCCTCTTTCTATTTTTTTTTATT 1503 30 100.0 37 .............................. CCCAATAAAGGTCCGGAATCCTCTCCCATAGTGGCTT 1570 30 100.0 36 .............................. TAAGGAATTTTTCTTCTAACGTTCTTAGAAGCCTTT 1636 30 100.0 37 .............................. AGTAGCTTTTGTTCAATAAAGTTATAAAAAGCTTTTC 1703 30 100.0 36 .............................. TCGAACAGGGGGCTGCCGAGATGCGTCGCGCCAATG 1769 30 100.0 36 .............................. CGTCAATGAGTGACGTTTCTTTTGACATAAACACGT 1835 30 100.0 34 .............................. TACGTAGGAGGCGGACTATGATAGTAGCGATTAT 1899 30 100.0 34 .............................. AAGATATTCGACAATATGGACGAGGAAATGCGTA 1963 30 100.0 36 .............................. AACTCAAAAGATAACACACCGGACAAGAACTCTTCT 2029 30 100.0 36 .............................. CCAATCTTCGCAGAGATAATTTCCGCGATCATTGCA 2095 30 100.0 35 .............................. CCATCGAGATCAAAGCAGAAATCGTTCTTATCCAG 2160 30 100.0 35 .............................. CTTGAAGCAGCCCTCGGGAACCTTCGACAGCTCCC 2225 30 100.0 36 .............................. CTCGCTCGTACTGCTTTGTCACCAGCTCGAGGTCGA 2291 30 100.0 36 .............................. AGTGCCAGCGAAACGACAATCTTTGCGAATGCCAAG 2357 30 100.0 36 .............................. AGCAGCTGGCGGACAAAATTTCGGAGGCGGACGGCT 2423 30 100.0 37 .............................. CTATTAATCATCGCAAACGCGCCTTCCACCATGGCAT 2490 30 100.0 36 .............................. TCGGCTGCCGTCTCCTTGTGGGCGGACTGGAGCTTT 2556 30 100.0 37 .............................. TTCTGAAGGTGAAGTTTCTCGAGGGGGGGAATAAGAA 2623 30 100.0 36 .............................. AAGCGACCAAGAACGCTCTAATTATGCCATTCATGC 2689 30 100.0 36 .............................. CCTTTAGCGACTCCGCAATCTCCTCGCAAGAGGTGT 2755 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 42 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TATGGTGCAATTGAAATTACATCGATTGCTCGCAAGCTCTGTCTCTAACCTTTG # Right flank : TCCGTTACAAATATAGGCTTTTCTATTTGAATGTGAGGAGTTTACGAGATAGTGAAACCCAATATTCAGACATTATAGTTGTCGATGTCTGATTCTATGAAAAATCAAGGGGTGTGACGACTGGTATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAATCGACGCTTCAAAAGATAGATAGCAGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAGCATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //