Array 1 6628-6892 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGD01000216.1 Arthrospira sp. O9.13F scaffold_216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================== ================== 6628 32 68.8 38 C..T...G...G..T.......TC..CAA... AATTAGGCCTCATCCTTTTAGGGGGAGGTTGGTGGGGG 6698 32 90.6 49 .......G...G................G... ATATATTTCTCCCCAAAGTTGGGGGGCTAGGGGGGCAGCTAATTTAAGT 6779 32 100.0 50 ................................ GACGGAACTCTGCTTCCGTTAGAGGTCTATATAGTACCGTCCAAACTCGT 6861 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================================== ================== 4 32 89.8 46 TTCCATACGTTTAACTTTCAAAGAAGTTTAAA # Left flank : CGCTTTGGGATGCAATTTCTACAAGGCAGATTTGCTGGGTGCGAACTTGAGTCAAGCTGATTTAGAACGGGCGAATTTAAGTTATGCTAATCTCAGGGATGCGGATTTGAGTTGGGCGAATCTCAGTGGTACAAATTTAGCACAGACGAACTTACAAAATACCAATTTGAGGTGGGCAGATTTGGATATTGCTAACCCGGAACACGCTCAGTTCAAGTTCACGACTCTAACAGGAGTTCGTCTGCCCTGGGGAGTCTATATTGTTAGTCATAAAAAGGCGAGAAAGGAAGAACATTATTAACTTTTCAATCGGTAAAAGCTCAAATTGAAAAACATGACTTTTTACAAAAGCTGGTTCCTCAAGCTGAATATTAAGTGGTTTACAACCCATTTTAAAATAGCAGCACTTTGACTTCTAAGCCGGTATCAAGTATGGAAAGAAACTGAATTTATTTTAATAATATACCCTCTACTTGGGGGGTATTTTTTTTAGTTATTTG # Right flank : GGGGGTTGAGGACATCTGCCGGCAAGAATCGGAAACGTTTCCATACGTTTA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCATACGTTTAACTTTCAAAGAAGTTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 13431-13788 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGD01000029.1 Arthrospira sp. O9.13F scaffold_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 13431 37 100.0 45 ..................................... ATCCCTTTTACACAATTCAGCTGAAACTGTATTTTTTCTTCCGGG 13513 37 100.0 40 ..................................... ACCTTTTATACAGCTGATCAGGGGAATGGAAGGAAGAGCC 13590 37 100.0 48 ..................................... CTGCCATAATAGCAGCAAAACCTTTCATGTTCAGAGATGAACATTCAA 13675 37 100.0 40 ..................................... TCATTTTTCTAAGTAAACTCATTGGTTTTATGCAGGCTAA 13752 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 5 37 100.0 44 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCAATAGGATTATGCTCTGCAACTGAAGTTAATGTGCGTGAGAAGTAGTCCAACCCTACCAATTCCCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 2252-972 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGD01000411.1 Arthrospira sp. O9.13F scaffold_411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 2251 37 100.0 42 ..................................... TTGCATAATAAGCATCTCATTCCTTGTATCCAATGGGTCCCC 2172 37 100.0 41 ..................................... GGTCGCTTAGTATTTCTTCAAACGGGGTCAAACCAATTACG 2094 37 100.0 46 ..................................... TAATGTCAGCAGTATTTCGGTCAGACTGCCTCTGACCCCGCCAAGG 2011 37 100.0 41 ..................................... TTCACGGTGCCTAACACCTCACCCTCCACCCTGTAGGTGGA 1933 37 100.0 41 ..................................... CCAGTGTTTTGGTAAGCTATTGTCCGGGAACCAACCGAACC 1855 37 100.0 43 ..................................... TCATTTTGAACTCGACCCATAGGATCCGGGTATTGTCCGCAAC 1775 37 100.0 37 ..................................... ACTAAATTTATAGTATCATTTTCCTTTTTTATACTTT 1701 37 100.0 49 ..................................... GTTGAGCGATGAATCGCTTACTTATGAATCCACTACCTGCTAATTCAGC 1615 37 100.0 42 ..................................... TTCTGATTTGAATAACCGAGGCATTTTGTTATCAACGCCGTG 1536 37 100.0 40 ..................................... TTAAAATATACATATTGGATATCAGCAGGCAGCACCGACA 1459 37 100.0 42 ..................................... GAAGAAGTTGGATCTTTTTCCCAAAATAGTCCCGCGTGGAAC 1380 37 100.0 47 ..................................... GGGGCTGTCTCATCAATCGGGGCTGTCTCATCAACCGGGGCTGTGTC 1296 37 100.0 36 ..................................... ACTCTATCTCAACGCCTAAGCGTTCGATGACTTGCA 1223 37 100.0 44 ..................................... TTACCGTCGGCCTTCGGGTAGGCCATGCTGATCACCGGTTGCCC 1142 37 100.0 30 ..................................... GGCGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [1076] 1075 37 91.9 30 .........G...........AC.............. GGCGCGATCGCCCTCCATTTAGGCGTCAGT Deletion [1009] 1008 37 91.9 0 .........G...........AC.............. | ========== ====== ====== ====== ===================================== ================================================= ================== 17 37 99.0 41 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCGACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCTTTGGGGGTAATAGTTTCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : CGGCGATAAAACCGAGTGGTCAAAAAAGCGCCAATGGTGAAGTCTTGTTAATCAAAGTGTGGGGGGGGTTGGGAAACCGTGTGAGGAGAAGATATTTCCCATCAATTAACCTTCCACTTCCTGATTAGTTGGTTGGGGGGAATTTCCTAACCTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAACCAAAATGCTGAATTTCCAGAAAGTTAGCATAAGCAGGCGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGCGTCGCCGCGCTTTCCAGGGGACCCACAAAACTACTATCGCGGTCTAAAAAATAAGGCTGTTTTACCCAATGTTCCATCTGGTTATTATTCAGGAAATAACAGCCAGCGTGGGGGTTTAAGCTGCGATTAAATTGAATGGGTTGTTCCATCACTTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCGGTTACATGGGGTAATAAATCCCCATCCACATAGGCTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 6712-7045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGD01000132.1 Arthrospira sp. O9.13F scaffold_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 6712 35 100.0 39 ................................... CATTATCTGCTACTTCTATACTTGGTAAAATACCACCTG 6786 35 100.0 37 ................................... TAGTTTTTTCCTCCCTCTTATCGCGCCTCCCATCACC 6858 35 100.0 34 ................................... AGTAGAGTCCCATCTAACATAGTAAAGGGGCGAT 6927 35 100.0 49 ................................... ATTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 7011 35 88.6 0 ............T........C...C.......C. | ========== ====== ====== ====== =================================== ================================================= ================== 5 35 97.7 40 CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTCTTGATTCATGGAGCGAAGGGAATCTCTAAACAACGGATGGAAGATGTGCGCTCAGAAGATTTAAAAAATCCCAAGAATCAGAAGATTAAAAATACGGTTCGTGTTTCCTGTTTACCCACAGAGATTATAGCACAAATGAGTCAAATTTATTGCTGTTTCGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGAGGTGAATCAGGAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAATGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCGTGCTTGAACCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTAAACTCGGTAGC # Right flank : CCCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTAGAACTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //