Array 1 5574-6759 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODE01000006.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4108_R1 NODE_12_length_132932_cov_0.872848_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5574 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 5635 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 5696 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 5757 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 5818 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 5879 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 5940 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 6001 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 6062 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 6123 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 6184 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 6245 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 6306 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 6367 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 6428 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 6489 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 6550 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 6611 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 6672 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6732 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23429-25044 **** Predicted by CRISPRDetect 2.4 *** >NZ_MODE01000006.1 Salmonella enterica subsp. enterica serovar Newport strain R8_4108_R1 NODE_12_length_132932_cov_0.872848_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23429 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 23490 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 23551 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 23612 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 23673 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 23734 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 23795 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 23856 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 23917 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 23978 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 24039 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 24100 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 24161 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 24222 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 24283 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 24344 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 24405 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 24466 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 24527 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 24588 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 24649 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 24710 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 24771 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 24832 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 24893 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 24954 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 25015 29 100.0 0 ............................. | A [25042] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //