Array 1 12678-17834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNUP01000060.1 Spirochaeta lutea strain JC230 contig869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================= ================== 12678 32 100.0 33 ................................ AAGGTGGAGGAAGCGTAATAAACCTACCGTTTT 12743 32 100.0 35 ................................ CAGCCTAAAACACTTATTACGGCTTGGATCCCCGG 12810 32 100.0 35 ................................ AGGGGGAAGCTCAGGAGGTGAAGTTTTACCTGCGA 12877 32 100.0 35 ................................ CTGCTTGCCGAAGAGCGCAAAAATCAGGAGAGAAG 12944 32 100.0 34 ................................ ATTATCTGCTAATATAAACCTGACACGAAATCTG 13010 32 100.0 34 ................................ ATTTTGATTTAATCCAGCAGGTAGTTAACCACGT 13076 32 100.0 34 ................................ TGTACGCCTTACCCGGTGATTGTCGGCAAAGACA 13142 32 100.0 35 ................................ TAGCCCCATAAAACTCCTCGGCGGTAACAAGATCA 13209 32 100.0 35 ................................ AAGGGCCACCGGCTGAAAATCTTTCCAAAACGCGG 13276 32 100.0 34 ................................ CCGGAACTGCATATCAATAAATGGAATGGATCTC 13342 32 100.0 35 ................................ AACGATACCCCTTTTGGACTGAGTGTTGAGGAGGT 13409 32 100.0 35 ................................ ACGTCGAGGAAGGCCTTGAAGTTCAGATTTCTGAT 13476 32 100.0 34 ................................ ACCTGTTATCAGGCGAGGTCGAGCAATCAGAGGC 13542 32 100.0 35 ................................ TCGTTTTCGCACCTCGGGATCCCCAACGCCGGAAC 13609 32 100.0 34 ................................ TTGATCTAAATCAGCGTTTCCTTGGTCTTAATTT 13675 32 100.0 34 ................................ TTTGCGGATGGATGGGGTTAACAACGGCCTGGGA 13741 32 100.0 35 ................................ CGGCGGTGTTTTGATAGATGGTGTAGTCCATGGCC 13808 32 100.0 35 ................................ TCCGCCTATCCTGGCGGAGATCGTTACCGGAGTGA 13875 32 100.0 34 ................................ CGGAGGCCAAATCCCTCGGTATACCCGACTCCGG 13941 32 100.0 34 ................................ CATTTGGCGAAAAAATTACAACGATGTTGTAAAT 14007 32 100.0 34 ................................ TCCTTTTGCAACGTGTCGGTATAAGCGCTTGCGG 14073 32 100.0 35 ................................ CAGGCGTTCAGATCGCCATTGGCTACGTTGCTTCC 14140 32 100.0 34 ................................ CGATGTCTGAGAAATCATTATTTATGTCAATCTT 14206 32 100.0 35 ................................ CGGCCTGAATTACGTTGATTGTGAGGGATGCGGCC 14273 32 100.0 34 ................................ TCTTCTGCCGGGACAGCGATGGAGGGAGAAGCTC 14339 32 100.0 35 ................................ ACATAACTATTAGATATACGCCATCATTCGTATAA 14406 32 100.0 34 ................................ AAAGGCGGCGACTACATTGGCTGGATTGAAACAG 14472 32 100.0 34 ................................ CATTTCATCCTCCAAAATATTTCATCTAACTTAT 14538 32 100.0 34 ................................ TGATTGTGGTCGCACAGTATAAAGGAGTAGGCCC 14604 32 100.0 34 ................................ CTTGGATCGGCGGATTTTCGCAAATATCAGGTAG 14670 32 100.0 34 ................................ TCACGAACTCGGTTGAAGCGAGTAAAGTTAACAT 14736 32 100.0 34 ................................ TCAACAGTCCTCGAGGAGGATGGAACCATGAGAA 14802 32 100.0 35 ................................ TGTTATATCCCCATTTTCTATTGCTTCGCCCTCGT 14869 32 100.0 35 ................................ TCCACGCTGGAAGATCAGATCAAAAAATCCCGCGA 14936 32 100.0 35 ................................ TGCACCACCGGCCGAGGCAGAGGCATCGGAATCAC 15003 32 100.0 34 ................................ AGAATGCCACCACCCTCAAGGACATCGAGGCGGC 15069 32 100.0 35 ................................ GAAGTAGGCGGATACACAGTATTAAAGCACATAAG 15136 32 100.0 70 ................................ CCGTCCTGATAATCAAGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 15238 32 100.0 33 ................................ CATGAACGCCAGGAAATGGCGGCGGCGAAAGCC 15303 32 100.0 35 ................................ CGCCGTAGTACCCCCACTTTGCAACCTTTACGGAC 15370 32 100.0 35 ................................ AGCTATTACTGCTGATATTGCTGTTGCAAGCGCGG 15437 32 100.0 34 ................................ ATTAAAACTCCAGTGCCTTGAATGAAGATCCGGC 15503 32 100.0 35 ................................ TCGCGTCCTCTCTCCAGCTCCTGGGTGGTAATCAG 15570 32 100.0 35 ................................ AAACGCCTACATGCCCACCGAAGAAGGCCCGGAAG 15637 32 100.0 34 ................................ GCTGTCTCATATACTGATGTGACAAACGGTATTA 15703 32 100.0 34 ................................ ATATAAGGATTTGATCGTAATTGGCGAAGAGGCC 15769 32 100.0 34 ................................ ATTCCGATCATGTCGCCGCCTCCACTTCTACGAT 15835 32 100.0 34 ................................ CTCCAGGATGAAATCCGGCTGTAGAACCGTACAA 15901 32 100.0 33 ................................ TTGTATTTTGATTGAAGGGCGTACCCGAAGGTG 15966 32 100.0 34 ................................ TACGGACGAACACCGATCCAGACTGCTACCAAAA 16032 32 100.0 34 ................................ TTGTACGACTGCACCTTGGGCTCTTCGTACCTGT 16098 32 100.0 34 ................................ CCTGTTGTGGAGTTTCTACCGTTACGGTCTCTCC 16164 32 100.0 34 ................................ CTCGGGACGGAGACCGGCTCCGATCCAAGTCGTT 16230 32 100.0 34 ................................ TTCGGTCTGCGGTATCTTGGTTTGAGTTGTAGCC 16296 32 100.0 34 ................................ CTAAAAGCTGATACCCGGATATATCACCCTGGCC 16362 32 100.0 34 ................................ ACCATCGTTGTAATGGTTTTCCGCGACTTCATAC 16428 32 100.0 34 ................................ TCCTTAGTTGACTATCCGTGTAATAAGCTACTGC 16494 32 100.0 35 ................................ GATGTAAACGAATTAGAAATCGTTATGCTAATGAG 16561 32 100.0 34 ................................ CACTGACTCCAGATCCAAATAACCACCTACGGTG 16627 32 100.0 34 ................................ GGTAGACTGACCAAGGACGCGGAAATCAGGTACA 16693 32 100.0 36 ................................ TTGTTGCTTCCGTTGTTCGGAGCTTCCATTGCTCTT 16761 32 100.0 34 ................................ CTCGCTGTCTGCTGCCATCTCCCCGGCCTCGGCA 16827 32 100.0 34 ................................ CGAAGATTCGAGAGCTCTCCCACCTATACCAAAA 16893 32 100.0 34 ................................ TATGACTGGGGCTGATTACACGGACTATGGAACC 16959 32 100.0 89 ................................ CGAATGCACTTACCGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGCAGTGATGGGAAAAGC 17080 32 100.0 33 ................................ ATGGCCGATGTCCGGTTAATACGGTCCGGTTGG 17145 32 100.0 33 ................................ TCTGAGCGCCCGCTCAGTAGTGATCCCGTGCAA 17210 32 100.0 34 ................................ CCAGGGGCAGAACCACCAATCTGGCAGAACCCAG 17276 32 100.0 35 ................................ ATGCTCAAGGTGTCTGGCTGATTCCGATACAGCAC 17343 32 100.0 34 ................................ TCTCTAATCTGCAAATTGGCCTATATTTGTCCGC 17409 32 100.0 33 ................................ CCTCCTCACCGACGGAAAAATCCACAGAACCCC 17474 32 100.0 34 ................................ AAAGAAATCAACCCATGCTAATCCGCCATTGCCA 17540 32 100.0 34 ................................ TGTTATCCAGGCAAACATGAGAACACGAGCCCCG 17606 32 100.0 34 ................................ CCGGTAACGTAACCGATTTTTAGTGTTATGCTGT 17672 32 100.0 34 ................................ GGGAGCATTGTACGTTTGTAATAGACTCGCCGAA 17738 32 81.2 34 ..............C.A.AAT......A.... TCCGCCATGACGTTTGGTACCGGGCAATTTCAGT 17804 31 71.9 0 ........T..CT..A....A.-A...AC... | ========== ====== ====== ====== ================================ ========================================================================================= ================== 77 32 99.4 35 ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Left flank : CGCCATTTTTCTGGAGGTGATACATGATGGTGCTCATTAGTTATGATGTCGCAGTAACCAGTACCGGTGGTGCACGAAGATTGAGAAGAATAGCCAAGGAGTGTCAGAACTATGGTCAGCGAGTACAATATTCGGTTTTTGAATGCGTCGTTGATCCTGGGCAATGGGCTAGGCTGAAGCACTCCCTAGAGACTATCATGGACGCCGAGCTTGATAGTCTCCGATACTATTACCTCGGGAAGAACTATAGAAACAGGGTTGAACATGTTGGCGCTAACCCATCTCGTGATGTTGACGACCCGTTAATAATCTGAGATGCAGGCCGCGAACCACAAACACACATTAAACCCAGGACCTATCGCGCACGGGATAACTTCTTACAGTACAATGATCTTTAAAAAATTAGAGAAGGAGAATACTGTCCCTGAGAGCCATTCATATAGTGTTTCGCGTTACAGCGAGGTTAACTATTTATATAGTAATATGTTATAATAGGGTCT # Right flank : CCCAGTTTGTTCACTTACCAGGGCAGAAGTCAGTACTGTCATCCCTCCCTATTAGCCGGCTGAATCGAAATTCCGAGCCACTATCGTATTAAACCAACGCCAAGCCATAGCCTCGAAGCGTAACTACTCGACAACTCAACGTTGACATAAGGCACACGCAGTCATACCATATTGCTATGGCATTCTACTGGAATGGGGATAAGAACAATCAACTCAAAAACGAGAGGGGTATTTCGTTTGAGCGGATTGTTGTCGCCATAGAAGAGGGTAATTTGGTTGATGTATTTGAACATCCGAACAAAGAACGATATCAAAACCAGTTGATCCTGATCGTCGATATTGATGGCTATGCGGTGTGTGTGCCATGCGCACGGGAAGAGAATGGAGATTACTTCTTGAAGACCTTATTTCCAAGCAGAAAATACACCAAGGCATACAATCTTGGAGGGAGCAAAGGATGAATGAGAAAAAAGAAAAAGAACTAATGAATTCCCTTGAGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1449-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNUP01000009.1 Spirochaeta lutea strain JC230 contig319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1448 32 100.0 36 ................................ GTGCTAACCGTTTTTCTGATCGTGGTCGCACAGTAT 1380 32 100.0 36 ................................ CTGATTTAAAATATTTTTGTTGACACACATAGTCAA 1312 32 100.0 35 ................................ TGAACTGGCTTAAGCAGGATCCGCCAGAAAAGTTT 1245 32 100.0 35 ................................ ATTGCGGTTATGTTTTCAGGATGCTATTGGAATGT 1178 32 100.0 34 ................................ AAGCGTAATCGTGTCTATTGTCTCTGTTGATAGA 1112 32 100.0 35 ................................ AATGACCTCGCTGAATTTATGCTATTTGATCCCGC 1045 32 100.0 34 ................................ TCCGCGGACAACCGATGGAGTAGCAGAGCTAACG 979 32 100.0 34 ................................ TCTACATAATCTGCGTACTCGGCAGTAGGCCCAG 913 32 100.0 34 ................................ CAGGTCTGCAAGGCAAACTATTGACTCAGGGCGC 847 32 100.0 34 ................................ AGCCTATGGGGTGTTGCCCCCGGCCGAGGAAACC 781 32 100.0 35 ................................ GCATAATCGCAGAACGTTATGCAGAATCAGCATAA 714 32 100.0 34 ................................ GCTAAAATACTTTGCCGAAGCGGATACTACCGGG 648 32 100.0 35 ................................ CCGGTTGCGTTAAACTTTTTTGCAAGCTCATCTGA 581 32 100.0 35 ................................ ATGGAAGAGCTGAGCAAGACCGGTGCTGCTGAAAA 514 32 100.0 34 ................................ ATTGCTAACCGCAATTAATTGACCACGGTTCGAA 448 32 100.0 34 ................................ TACCGGAGAGCATGTACAGATCGAAGGCCACAAG 382 32 100.0 34 ................................ ACCCCGGGAAGCTCAAGCCCGGGTCCAGGAATAC 316 32 100.0 34 ................................ CTGGGGTCGATGATAGAATCACTGATGCAGAAGA 250 32 100.0 34 ................................ TGGTGAATTATCATCCTGCGTAGTAACCCTGAAA 184 32 100.0 34 ................................ AAATTCTCCGTCTACATAAATGCTTAATGTCTTT 118 32 100.0 34 ................................ AACACACGGTCGATAGTATCAAGAGCTTTGAGGA 52 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 35 ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Left flank : GAAGCAGTGATGGGAAAAG # Right flank : CCCGTCCTGATAATCAAGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCCCGTGCGGGAGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //