Array 1 421051-421992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPV010000002.1 Salmonella sp. 32040203-2019-00173 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421051 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 421112 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 421173 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 421234 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 421295 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 421356 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 421417 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 421478 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 421539 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 421600 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 421661 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 421722 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 421783 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 421844 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 421905 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 421965 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 438662-440685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPV010000002.1 Salmonella sp. 32040203-2019-00173 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 438662 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 438723 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 438784 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 438845 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 438906 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 438967 29 100.0 32 ............................. GCTGAAGCGCCAGGATACCCTGAAACGCTACC 439028 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 439089 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 439150 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 439211 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 439272 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 439333 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 439394 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 439455 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 439516 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 439577 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 439638 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 439699 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 439760 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 439821 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 439882 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 439943 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 440004 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 440065 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 440126 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 440187 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 440248 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 440309 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 440412 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 440473 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 440534 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 440595 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 440656 29 96.6 0 ......G...................... | A [440683] ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //