Array 1 38-4635 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNR01000005.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SBO13 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 38 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 99 29 96.6 32 C............................ CGCCAATCTCCAGTCGAAAGGTGCCGGGTGTG 160 29 100.0 32 ............................. GGGCATGAGGGTGACTTTGATCCGGAAGAACT 221 29 100.0 32 ............................. GTTACGTCTGTCCCCCTGAGCCGGATTTGTTC 282 29 100.0 32 ............................. AGTTTTGTGCGGGGTGGATGTCCGGTACACTG 343 29 100.0 32 ............................. GCAGTGCTCAGCGCCTTTGCGGCCCAGTACGT 404 29 100.0 33 ............................. GTTTGAGCGCCTTCGGACGTTGCGTTACCTGAA 466 29 100.0 32 ............................. ACTGCTGACCGCCGCCCGGTAAAACTTTTACA 527 29 100.0 32 ............................. GCTACGACCGACAGACCATTATTGACCTGGTA 588 29 100.0 32 ............................. CGCTGCGGGAGGATGTGAAATACCCGTATCAG 649 29 100.0 32 ............................. AATTCATATATATTAACCCTGTTATTTTTCCG 710 29 100.0 32 ............................. CGCGGTATCTTTCTGATTGGCACCGCCAAACA 771 29 100.0 32 ............................. TTTGATAGCAAAGTTCATTGTCCTGCCTCCTC 832 29 100.0 32 ............................. AGTACCTCTGACAACGTGGTGCGCGTGGATGC 893 29 100.0 32 ............................. ACGGCAAGGCGACTACTAAATGGTTTTTCGGT 954 29 100.0 32 ............................. AACGCCAGTTCATCACGCGCTACCTGGACAAT 1015 29 100.0 32 ............................. TGTTCCACGTTAACCCGCGCGCCGTACACCGT 1076 29 100.0 32 ............................. CTTACACTGCCTGCTGCTCAGTGCCCGGTATT 1137 29 100.0 32 ............................. CGATCGAGAAGGTCAGCGTGTGACTGCGCCAC 1198 29 100.0 32 ............................. CGACCACGCTGTACCTGGATAATACGGACGAC 1259 29 100.0 32 ............................. GATTTAGGCGAAAGCGCCGATATTGGGTCAAA 1320 29 100.0 32 ............................. GGACAAAAACTGGCCGGAAGAGACGAAGCGAA 1381 29 100.0 32 ............................. GCTTTTCGCTTGCTGGCAGGCTACAGATGGCA 1442 29 96.6 32 ............................T CAGATAGAACTGATCTCATTGCTCCCGCCATA 1503 29 100.0 32 ............................. CAAATTGACAGGCTTAAAATTGATACGCAGGA 1564 29 100.0 32 ............................. CAATATTTCTTTCCCGCCAGTAAAGCCCCTCC 1625 29 100.0 32 ............................. TGTAGTTGACTGTGCTCACGAATTGTGAATAA 1686 29 100.0 32 ............................. GGTAATTGTGTTCCGCTGGTATTTGATTTTAA 1747 29 100.0 32 ............................. CATGAATATCAGCCAGCAACTCAGCGATTATG 1808 29 100.0 32 ............................. AGTCTCATCAAATATCGGACAAACCTGATGAA 1869 29 100.0 32 ............................. GCTATGGTCTGCTGCTTGAGGGCGTTGTTGAT 1930 29 100.0 32 ............................. CATTCTATAACCGACTTATTAATAAAGGTAAA 1991 29 100.0 32 ............................. CAGAACAATCAGGCGTCAATGCTTCTCTTGAA 2052 29 100.0 32 ............................. GCATCAGCCAGCGCGGCGTCGGCTGACACAGC 2113 29 100.0 32 ............................. CGACGGGAAGGTTTCGAAAATCTGGATTGTGA 2174 29 100.0 32 ............................. AATTTAAGCGCGTATCCGGCTATAACGGCGTA 2235 29 100.0 32 ............................. CGCTTATACATCACAGAACCCCTTTAGAAGTG 2296 29 100.0 32 ............................. TCACATGCAGTTCCGGCGGTCGCTGGATTTTA 2357 29 100.0 32 ............................. GTGGGGAATTTATCAACGCCGGTGTTGGTGGA 2418 29 100.0 32 ............................. GCTGCGATTATGGCACGACATGCCAAACGACC 2479 29 100.0 32 ............................. TCAACGGATTTTACCAGGTGAGCGCGGACAGG 2540 29 100.0 32 ............................. GATTTCTCGTTATTTCCGAACAAGCCGGATGA 2601 29 100.0 32 ............................. AAAATAAGGACTCCCTGTTTTTACCGGTAGTA 2662 29 100.0 32 ............................. ATTTGTGCTACTGGGGCTATTCGGAGTTTGAA 2723 29 100.0 32 ............................. TTAGCAATTTTGGCAATCTTGAATTTGGTTTC 2784 29 100.0 32 ............................. TGGTGAAAGAGGTCGAAGAGAAATACGTGCAC 2845 29 100.0 32 ............................. TCTTCATATACTTTTATAAAGTCCGCGCTTTC 2906 29 100.0 32 ............................. GAACGACGACACCACGCAGTGGGATAACATTA 2967 29 100.0 32 ............................. GTGAGCATCAGGTTCTACGCATTAGCGGCCAA 3028 29 100.0 32 ............................. GCTATTGTTGAGGCTGACGGCGAAGAATTTAA 3089 29 100.0 32 ............................. CCGCAGCGGGGTCAACTGGCGGCGTTTGAGGG 3150 29 100.0 32 ............................. GTTATCAGCCTGTTTTTATATGTGGTGGATAT 3211 29 100.0 32 ............................. GCAAAAAAAACCGCCATACGCCGCCTGTTCAA 3272 29 100.0 32 ............................. CGGCGTTAACCGGCACACTGACCGGGGAAAAT 3333 29 100.0 32 ............................. CCATTACGCACCTTGAGCAGCCCGGTATCACC 3394 29 100.0 32 ............................. ATAACGTGAGGGCGGCACTGCGATACAAGGTA 3455 29 100.0 32 ............................. ATTGATTATCTCGGCCATCTGGTCGGGGTGTT 3516 29 100.0 32 ............................. CCGGACGAGGTACGCGCCAAGCTTTGTAAGGC 3577 29 100.0 44 ............................. GCACCGGCAGCGCCTACGGCGTCTCGCTGGCGGAACAGCTCGGC 3650 29 96.6 32 ............................C GTAACTGCTGCGGGGCAACCATACCACCATAG 3711 29 100.0 32 ............................. GATAACTGTACCGACTCGCCCCGTACAGACAA 3772 29 100.0 32 ............................. TCAGCCAGTTCAGCACGAATGAAATTAGCGAT 3833 29 100.0 32 ............................. GTATCGGCTGGGGTGTCGATATTCTGGAAGAG 3894 29 100.0 32 ............................. AGCACCATAGGTATTTACGTAGAGGGGCAAGA 3955 26 75.9 16 ...............A..T...A.G.--- TATTCACGGCGCAGTA Deletion [3978] 3997 29 100.0 32 ............................. CGTCTGGGGGTTTTTGTCCCTAAGCCGACAAA 4058 29 100.0 32 ............................. GTGAGTCCGCCTTCAGCCTGAACTCGCTGATA 4119 29 100.0 32 ............................. GCGGTAATTCGTTTACGGTGAATATAGGCGGG 4180 29 100.0 32 ............................. TGGATACCAGCCGTAGTGCGTGATAGTGACGA 4241 29 100.0 32 ............................. GCATAGGCTCATTCTGTTCTCGCGGGAACGGA 4302 29 100.0 32 ............................. GTGCTATGCTGTCCCGTATTTTTTCCCGTCTA 4363 29 100.0 32 ............................. ACGGTGCAAGCGGTACAGTAAAATACACCTGG 4424 29 100.0 32 ............................. AAAATATCCCACAGATTCAGTACGCGTGACCG 4485 29 100.0 32 ............................. GCGTGAGGTTTGTTCTGCGTCTGACGGTGGGG 4546 29 100.0 32 ............................. CTCTATAGCCTCTTGTTTTTTAAGTCTAACGG 4607 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 76 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGTTCAGATCCAGCCAGTAAGCACGCACGCCTGTG # Right flank : GAAAGCAGTCTAAATCCCCTTAGATACACCCAGTAGTTGTTACTGCTGCCAGTGTCATACCTGTTGTGGTCGGCGCTGATATTATATGGGGTATCCGGGATATGGAAATCACTGTAATTCACAGTCTGCTGCATACAGCCCCGATTATCCTTCTGCAGGCTGTAACTCACCTGACGGCTGTCGTCACACGGAATACTGAAACCACCATTCCCCACCTGCGCCAGTTCATACCATTTCATCAGCTCAGCGGTTCCCGGCTCGTTTTCGGCGGTTGCCCATGGATCCATATCTTCTTTAGCTACAGGCTGGTAACCCCTCGTGTTTTACCTCAAAAAAAACGCCGCCTTTATCCATCGACAACACGGCATGCCATGTTGCATCCCTCTACTCATTGTGCAGCCCCATTGATAAGGTTCTCTATTGGTACAGAACTACCTGTCAGATTAGGTTTGGCTATTGCGCAATAGATGTGTCAGGTCAAATCTGAGCTAATATACGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 366299-367059 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNR01000005.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SBO13 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 366299 29 100.0 32 ............................. GATGAATGACGCGAGGCTGATGTTTGCAGAAA 366360 29 100.0 32 ............................. TCAGACGCCCCTTTTTTGCCGATCTCATACAC 366421 29 100.0 32 ............................. GACGGGCGCCGGGTGGAATTTACCGCAACCTC 366482 29 100.0 32 ............................. ACAGTTGAGCAGGCCCGCGAACTACTGGCGGC 366543 29 100.0 32 ............................. GTGGTCTGATGTTGTCGAAACTGACGGCGAAT 366604 29 100.0 32 ............................. AATCTCTTAAATTCCAGTCGGTTCACCTTGTC 366665 29 100.0 32 ............................. GTCGCATCCGACATAGTGAAATGGCCTTTAGC 366726 29 100.0 32 ............................. TCTGCACAGGGAAACGCAACGAAAAGCGCGAA 366787 29 100.0 32 ............................. CCATCATGGCTACGACCCCAACAAAAAAACAC 366848 29 96.6 32 ............................A CCACCTTCAACACTAACACCAGAAACCAAACC 366909 29 100.0 32 ............................. TTCAGATCCAGCCAGTAAGCACGCACGCCTGT 366970 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 367031 29 96.6 0 C............................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : GGAAGGGCAGGAGTGGCGCTTTACCGCGCTGGCGTTGACGGCGGCAGTAGCGGCCCATATCAAATCGATAGATGAGCGGCAAAAATTCGCCGCACAGCTAAATAACGTCATGTCGGAGCTACGATTTTCCCGACTTTGCGCGGTAAAAACCCCCGATGAACTGCTGCGCCAGCTCCGACGCGCGGTGAAGTTGTTAAATGGCACAGCCAACCTGATTTCGCTGGCGGAGGATATTTTCCACTGGTGCCAGGAAAATAATGAGTTGCTGAACCACCATCGCCGCCAACAGCGGCCAACCGAATTTATCCGTATCCGCTGGGCGCTGGAATACTACCAGGCCGGCGATGACGATAACGAAAAAGATTAACAGGGACTCTCAAATGACAATGTTTATTCAACTCCATTTATTAACCGCTTATCCTGCCGCCAACCTCAACCGTGACGACACCGGCGCGCCAAAAACGGTAGTGCTTGGTGGCGCAACGCGTTTGCGCATCTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 367711-369325 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNR01000005.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SBO13 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367711 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 367772 29 96.6 32 C............................ GGCGATACCGCGCACTGACCCTGACCGGAACA 367833 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 367894 29 100.0 32 ............................. GCTGGCGGTTCTGGATGACCTTTGTCGAGAAA 367955 29 100.0 32 ............................. AGATAGACCAGCAGTGGCGTCAGGCTGATACC 368016 29 100.0 32 ............................. AGAACGGCTGCGTCATTCCGCTGGAGGCTACC 368077 29 100.0 32 ............................. GCTCTTTTTTCAGTAACACTGATGCGCCGCCG 368138 29 100.0 32 ............................. CCAGCACAGGGTGCGTGCGTGTGCAAAGCGGC 368199 29 100.0 32 ............................. GTGATATTCACGATCGAGGTATCACTGACAAT 368260 29 100.0 32 ............................. CGTCTTTAAACCAGCCGTTGCCGGATCTTGAT 368321 29 100.0 32 ............................. TAATCAAGAAAGCTGTCGAGTTTATTTCTGGT 368382 29 100.0 32 ............................. GATACAGGCAGGTATTTGAACAGGCGGCGTAT 368443 29 100.0 32 ............................. CTTCTGTATCGGAATCGCTGATTGCCTGGTAT 368504 29 100.0 32 ............................. GCTGGAAATCCTGGGGAAACCGCACCGCAATT 368565 29 100.0 32 ............................. ACTACAGCCCCGACTACCCCGGATGCGGTGTA 368626 29 100.0 32 ............................. TCGGTGACGGCGGCGTTGTCGGTGATGGCCGA 368687 29 100.0 32 ............................. TCGTAAACCGAACCATCACGCAGAAGCGCGTA 368748 29 100.0 32 ............................. CATCTCAAGCAGGGGTTTACGGATACTGTCAG 368809 29 100.0 32 ............................. CATTGGTAACGCCATTTATTGCTGGAAATGGT 368870 29 100.0 32 ............................. GGTATTACTGGATTCAGCATAACGGTGTTGTT 368931 29 100.0 32 ............................. CAGGCGTTATCAGATGAGCAGCGACTTCAGAT 368992 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 369053 29 100.0 32 ............................. GCGACTATCGATTTAACAGGTAGATCGTCAAG 369114 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 369175 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 369236 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 369297 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGATGAACTGCTGCGCCAGCTCCGACGCGCGGTGAAGTTGTTAAATGGCACAGCCAACCTGATTTCGCTGGCGGAGGATATTTTCCACTGGTGCCAGGAAAATAATGAGTTGCTGAACCACCATCGCCGCCAACAGCGGCCAACCGAATTTATCCGTATCCGCTGGGCGCTGGAATACTACCAGGCCGGCGATGACGATAACGAAAAAGATTAACAGGGACTCTCAAATGACAATGTTTATTCAACTCCATTTATTAACCGCTTATCCTGCCGCCAACCTCAACCGTGACGACACCGGCGCGCCAAAAACGGTAGTGCTTGGTGGCGCAACGCGTTTGCGCATCTCTTCGCAAAGCCTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGTTCAGATCCAGCCAGTAAGCACGCACGCCTGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //