Array 1 16-268 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVO01000235.1 Aromatoleum aromaticum strain pCyN1 NODE_235_length_287_cov_15.275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 100.0 35 ..................................... TTGCGGCTACGACGTTCGAGGAGCGCCGCCAGCAC 88 37 100.0 36 ..................................... CTGAACCTCATCGTTATCCACAGGCGTGCCGAGCGG 161 37 100.0 34 ..................................... CTGTTACCAACGTAGAGAGTGCGCCCGGTAGTGC 232 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : GTTGCGGTCGTCCCGG # Right flank : TCCCGGCACCAGATCATCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.60,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 30300-31857 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVO01000044.1 Aromatoleum aromaticum strain pCyN1 NODE_44_length_31965_cov_30.4698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 30300 37 100.0 36 ..................................... ACGTACGGCACGATCGGCGAAGGCAAGGAAACCTAC 30373 37 100.0 35 ..................................... GACGCGACCGGCTTGGCGCTCCAATTGGCCTGCGG 30445 37 100.0 34 ..................................... GGGCATCGGGCACCTAAGGCGACCTGGCTTTACG 30516 37 100.0 35 ..................................... GTGTGCAGGCTCGCGGACTTATAGAGACTGAAAAG 30588 37 100.0 35 ..................................... CCGCGTGACCAATGACCATGCGTCTGTCGGACCCT 30660 37 100.0 37 ..................................... TCGCCCTGTCCCCCGCCGTGCACGCCGCCACCAAAGC 30734 37 100.0 34 ..................................... AGGTTGCCTATGACGGCACTCCGGCCCCTGATAC 30805 37 100.0 34 ..................................... CTCGTAGTAGCCCGGCGATGAGGCGGGCTGCACG 30876 37 100.0 34 ..................................... GACTCCAGAATGGAAGGCGCTTATCAAATACATC 30947 37 100.0 34 ..................................... CAATCTGAGGCGATGCGATGGGGTACGGAGCAAG 31018 37 100.0 38 ..................................... CTGCACCTGGTCTGCGCGACAGTTTCGGTGGCTACACC 31093 37 100.0 37 ..................................... TCGCGCTCCAGCCGGGCCAGATCCGCGATGGCCGCAT 31167 37 100.0 35 ..................................... GGCAGTGATGCCGAGCGCCGGCCCGGAGACTTTCG 31239 37 100.0 34 ..................................... CGCGGTCGTCTTGCTGATCGCGGCGAACGTCTGC 31310 37 100.0 36 ..................................... CGTCTAGCAATAAATACATCGGAAATCCCTGCCAGT 31383 37 100.0 35 ..................................... CGGATCGGTCGGGACGCGGTAGGCCTGGCCGTTGA 31455 37 100.0 36 ..................................... ACCGGGTCGAGGCGCACGCGGTAGATGTCGACGATC 31528 37 100.0 35 ..................................... AACCTCATCGTCGCAGCTGGCTCCGGCAAGGCCAG 31600 37 100.0 38 ..................................... CACGTCACGTCGCCGAGCGTGGAAAATCGCGACACGGG 31675 37 100.0 35 ..................................... AATATGAGCGAGCGCTGGGTTCGGAAAATAGTGAA 31747 37 100.0 34 ..................................... GCCTCGTCGTCGAGCAGGTTGTAGGCGGCAACGG 31818 37 86.5 0 .....................T.T.A......T...A | A,CC [31843,31847] ========== ====== ====== ====== ===================================== ====================================== ================== 22 37 99.4 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : CCCTTCCTCGTGAGATGAACCGATGCTCGTTATCGTTTGCTACGATGTCAACACTGAAACCCGCGCCGGCCGCCGGCGACTGCGGCGTATCGCCAGGGTCTGTGAAGGCGTCGGGCAGCGCGTTCAGAAATCGGTCTTCGAGTTCCAGATCAGTGTGATGCAATTCGAAGAACTGGAGCGCCGACTGCTCGACGAAATCGATCTCACCCAAGATAACCTGCGCCTTTACCGATTGCCCGATAGTCGCGGCACGGAAGTTCGGGAACACGGCATTTTCCGCACCACCGACTTCGAAGGACCGTTGGTGTTGTAGGATTCGCTTGCGCGAACCTCAAGCAACCGGAACATTCCCTATAGGTTCGCGCAGAGCGCAGGCCTTTGCTTTTACTCGTTATTACTCCGGATTGTCCAAATGAAATCACCCCGACGAACTTCTTCGCACAGAGGTTCTCGTAACACGTTCTTAATTCGTCGGCGGATCAATACATTACGTGCGAAGA # Right flank : CTGACACGCTTTCCCGGCGGTTGCCGATTTAAAACTGATACACCTCTATCCCATTGACATGTGCGACGGAGCGCCCCGAAGGGAGGGCCGAAGGCCCGACCGCAGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.60,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 76471-72819 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVO01000008.1 Aromatoleum aromaticum strain pCyN1 NODE_8_length_76619_cov_33.6609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 76470 37 100.0 34 ..................................... TGCTGAGAACGCAGCGGCTGCTGTGGCAAACCAA 76399 37 100.0 35 ..................................... CAGGGCTGACCGCGGGCCATGACAACCCTGATCCA 76327 37 100.0 35 ..................................... TGCTGAGAACGCAGCGGCTGCTGTGGCAAACCAAT 76255 37 100.0 34 ..................................... GATATGCATGCTCGCGTCGTCGGCGATATCGCTC 76184 37 100.0 36 ..................................... ATGGACATGGGCACCGGCAAGAGCCGCACGCTTATC 76111 37 100.0 35 ..................................... GAGGTGTGCGCCGACTCGGCGTTCCTGACGGGCAA 76039 37 100.0 34 ..................................... TCCAGTAGCCGCATACGATCGACTGCAGCGCGCT 75968 37 100.0 35 ..................................... GATCTTGATCCACGAGCCGCGACGGCTGGTCTCGT 75896 37 100.0 34 ..................................... CATGGCAAGCTATCCGAGCGGCAGCGCAACGACC 75825 37 100.0 34 ..................................... GGCCAGATGGCCGGCGACCCGCCCGCCTGGACGC 75754 37 100.0 36 ..................................... CCGCAGACAGCTGGAGCCACACCGGCACGTACATGG 75681 37 100.0 36 ..................................... TGCTGAGAACGCAGCGGCTGCTGTGGCAAACCAATG 75608 37 100.0 36 ..................................... TTGTTCTCCAGCGCAGGCGTGCCAGCATCCGGCCAT 75535 37 100.0 39 ..................................... GAGAATTTCGGCCGCGTCTGCGTGGCGTTCTCCGGCGGC 75459 37 100.0 35 ..................................... GCGTACTGTCGCGAGCACAAGGCGGAATCGCAGGT 75387 37 100.0 36 ..................................... GACATGCCGGAGATCCGCGGATGGTGGATCTGCCTG 75314 37 100.0 34 ..................................... GAGCAGATGGGTCGCGAATGAGTGGCGCATCGTG 75243 37 100.0 34 ..................................... GAGGATCTGTGGCACTACATCCGCAGCAACGGGC 75172 37 100.0 34 ..................................... GATCTGCCGCAGCCGGCCGGGCCGAAAAAGTAGC 75101 37 100.0 38 ..................................... AGCGTGGCGGGCTGGAAGCTCGCTTCGCGCACCTGCAC 75026 37 100.0 36 ..................................... TTGGAGTTCGCGAAGCTCCTGAACGTCTATCTCAAC 74953 37 100.0 35 ..................................... GATCCATGCGCGCTCGACGACGCCGATGGTGTTGT 74881 37 100.0 35 ..................................... GCACGTGCCGGCGCGCGGGGTCATCGGCCAGCCAG 74809 37 100.0 34 ..................................... GACGTCTTTGACGCGCAGGCGCAGTCCTTCCATC 74738 37 100.0 36 ..................................... GCTGGGTACGAAGTGCGCCGCGTTGTTGCGCGCGAC 74665 37 100.0 35 ..................................... GCGAGGGTGTAATCGAGGCGCAACATCGTTTCTGC 74593 37 100.0 35 ..................................... CACGAGACCAGCCGTCGCGGCTCGTGGATCAAGAT 74521 37 100.0 35 ..................................... TGACATGGCGAACGACTCTTAGCACCGGCTCACGG 74449 37 100.0 34 ..................................... CGCGAAGCGCTCGCCAGCGCCGGCATCATCACCG 74378 37 100.0 36 ..................................... TCGTGGATGTGGTGCCGGCGGATACTTGCGCTCGAG 74305 37 100.0 37 ..................................... ACCGGGTCGCAGGGATACCTCACGCCGCAGATCGAAG 74231 37 100.0 35 ..................................... GGTATCCGCAGGCGTCCCGAGCGGCGCACAGCCCG 74159 37 100.0 35 ..................................... GATCCAAACACCAACGTTGTCGCACTGGCATAGGT 74087 37 100.0 35 ..................................... TGATCAATGGGCGCGCTCCACGGTGGGACGTGCTA 74015 37 100.0 36 ..................................... GCCGGTGTCGCCTCGAACATCCTGTCGGGCGTCGCG 73942 37 100.0 34 ..................................... GAACAATGGAACCATCTGCTCGACACGAAACAGA 73871 37 100.0 36 ..................................... GAGCTGCGCAACATGCTCTGGCACCGCCGCCGCGGC 73798 37 100.0 34 ..................................... CTGACGATGCGCTATCCGGCGCAGCTCGATCTAG 73727 37 100.0 35 ..................................... TTCGCCGGGGCGTATGCGTTCTGTGCGGGCCTCGT 73655 37 100.0 38 ..................................... AACTGGATCGAAACGTTGCTGCCGATCCCCACGCCCGG 73580 37 100.0 39 ..................................... GGCCCCTACACGCCGCCGCTGTACCCGACGATCACCGCG 73504 37 100.0 36 ..................................... GAGGGTGATGCCCAGCAGCGTCGGCGCGGGAAGTGC 73431 37 100.0 35 ..................................... GGTTCATGCCACGACTATAGCACCGCTACAGATCA 73359 37 100.0 35 ..................................... ATACCGGCACGTTGAGAAAGCAACCGCCGGAAAGG 73287 37 100.0 34 ..................................... GACGCGTTCGCGCCCATCGCCAGCACGTCGGCGA 73216 37 100.0 34 ..................................... GTCGTGCTCGTCCAGCGCAGCAGCCAGCGCTCGG 73145 37 100.0 35 ..................................... GTCTTGACTGTCATGCTGCCGTCCTGTCCCTGCGT 73073 37 100.0 37 ..................................... CATTTTTCGTTCGTGGCAGAGCGTAGCGGGGTGACGT 72999 37 100.0 35 ..................................... GCACAGGTGCAGCGCATGGTGTGCCGCGCATGGGT 72927 37 100.0 35 ..................................... CAGATAGGCGCCGCCCGCACCTCCGCCGCCATATG 72855 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 100.0 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : AATTCGACCCTTGCGCTTATGAGCGTTTTACCCCATCCTCCGCACCGTTCGAAACGCCACTTTCAAACCCCTCCAAGTGGCGCCATTACGCCGATCATGCCCGGCGCCTTTATGCCGATCCGTGACATCATTGCGCGATCGCCGCAAA # Right flank : TATCATTTGATGGCAAGTCCACCAGGAGTGTCCATGAAGGCCTTTACCGCCCGAGATCTTCGCGAGCGCACTGCGCAAGTGGTCCGCGTTGCAGAGGAAGGCAAGATGTCCGTCGTGACCAAGCGCGGCAAGCCAGCTTTCGTCGCGGTGCCCTTCGATGAGGCGTTGCTGGAAAGCGGGGTACGGACATCGCTCGCTATCAGGCTCTTCGACGACGGAAAGCTCACGCTCGGACAGGCGGCGAGGTTTGCAGGGATCGGTGTCGAGGAGATGATCGACCGCACTGCGGCGCGGCCTGCGGAGTCGGGAAAGCCTGACGTCACTCGCCCTCGAACGGGGTAATTCAGGGCGATGATGCATCGTCTTCACTCAGGACGTGCACCCCCATGCCTGTAGGGATAAACCGCCGCCCGGATATCGGTGGATTGCAGCTACCTCAATAGGCTGCCGGGCAGCACAGGGATTTCCGCTGCGGACGGCGTTCGAATTGCGCGAGGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.90,-17.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 112-7344 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVO01000110.1 Aromatoleum aromaticum strain pCyN1 NODE_110_length_8266_cov_31.487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 112 36 78.4 36 A.....G.AG.-.ACA..................... GTGGCACCCGCAGCCATCGTCGAAGCCGCCCGCAAG C [115] 185 37 100.0 35 ..................................... TCGTGGTCCGCAAAAGGAGTGTGACGCATGGCTGA 257 37 100.0 35 ..................................... AGCGCGGAGCCCGACATCCTGGAGGCCAAGGAAAA 329 37 100.0 35 ..................................... GGCTTCAAGGTCATCCTGATGAACCTCACCGCCGG 401 37 100.0 36 ..................................... AGCACAACCGCCACATGATCGGCCAGTACGACGAGA 474 37 100.0 37 ..................................... CATCGCCTGTCGCGCTCCTCGTGCTGCTCGGCGGTGA 548 37 100.0 35 ..................................... CAGATGGTGGAGCTCACTGCCGCCGTCAATAAGGC 620 37 100.0 34 ..................................... GCCTCAAGCTCGACAAGCTGGTGAAGAGCGAGAA 691 37 100.0 36 ..................................... CACGGACCGCGGCCGTCGCTGTCTTGGATGCGATAG 764 37 100.0 33 ..................................... AGGTTCTCGCCGAAGTCCTCGCCCGACTCGAAG 834 37 100.0 36 ..................................... GACGATCAGCGCCGTGTCGCCGTGCGCTTCGGCGTC 907 37 100.0 34 ..................................... CAGTTCGCGCAGCTTCGCCAGCATCGGCTCGAAC 978 37 100.0 37 ..................................... GCTGGAACCCGTCGCCAAGGGGGCCGCCGACCTCCTG 1052 37 100.0 34 ..................................... GATGGTCGGCTTGTCGCCCAGGTCGGCCAGCATC 1123 37 100.0 34 ..................................... CATTGCGCGAACGTCATCAAACGTCGCCCACCAG 1194 37 100.0 35 ..................................... TGAAAAAGGGTGGCGTCAATCCGACTTACATCCCG 1266 37 100.0 35 ..................................... AGATGGTCGGACCACGCCTTGTGGTAGTCCTCGAC 1338 37 100.0 38 ..................................... ATCGAAGAGGCGGAAGTGTGGCCGGAATGCTGGCCGAC 1413 37 100.0 35 ..................................... GTCCGATGACGACGACAAATCGCGCGGGCGCCTGT 1485 37 100.0 36 ..................................... TGCGTGAAGCTCAATCCTTTGCACCAGTAGTCGTTC 1558 37 100.0 35 ..................................... GTCGTCCAGGTCAACGGTGGCGTCGATGCGTCGCG 1630 37 100.0 35 ..................................... GTCGTGCAGCGTGACGCCGTGCACCATCATCGTCG 1702 37 100.0 35 ..................................... CTCAGCGCCCCGCGCCAAGCCCGGCAAGTGGGGTC 1774 37 100.0 35 ..................................... TCCTCGAAGGCCGCGCCCGCGGCGAGCTCTCGGCG 1846 37 100.0 35 ..................................... ACTTTGTCGCCACGGCGTGACCGCACGTAATGCTC 1918 36 97.3 35 ..................-.................. TGCGCGCTGGCGACGATGCGCTGAATCAGGCTGCT 1989 37 100.0 35 ..................................... CTTCTGCAACGCGATTTGGGCGAGGCCGAAGCGCT 2061 37 100.0 36 ..................................... GACCATCTGCTCAAGGCTCTTGCCCATCGCGGACGC 2134 37 100.0 34 ..................................... GCTCGTGGCATGATTGCGGCGCTCGATGACTACT 2205 37 100.0 36 ..................................... AGCTGGTCCCGGCGCACATGCCGCACGAAACCATCG 2278 37 100.0 36 ..................................... TGTCTGGGAAGCACGGCGATCCTCGGTCGAGCACGA 2351 37 100.0 37 ..................................... AGCATTGGCATGCGCGACGTCGACGAAGCGGTGGTAG 2425 37 100.0 34 ..................................... TGCGGTGCTGTATCGCGAGTCGGATGTCGCAAGG 2496 37 100.0 34 ..................................... GGACGGAAGGCGAACGAAGACGGCTCCATCCGTC 2567 37 100.0 35 ..................................... TTCCTTACGGCGCCCGTAATCACCTCCCAGAACAG 2639 37 100.0 36 ..................................... GTCACTGCCGGCCTGCTCCGTGGCGCATTGAAGGAC 2712 37 100.0 35 ..................................... TATTTGAACGTGACCGGGATCACCGCCTCGGCGCC 2784 37 100.0 36 ..................................... TGGAGCGGTCCCTTTCAGAGCCTGTGTGCCGAGCAT 2857 37 100.0 34 ..................................... GCGTAGACCGTGACGCGCCCCTCGATCCACGGTG 2928 37 100.0 34 ..................................... GTCACTGCCGGCCTGCTCCGTGGCGCATTGAAGG 2999 37 100.0 34 ..................................... GCGCTGCGCAAGTCGCCGCTGCGGGACCGCTTGA 3070 37 100.0 34 ..................................... CCGTGTGGGGCTGGATCGCCATTGCCGCGCTGGC 3141 37 100.0 36 ..................................... GAACAAGGTCGGCACCCGGCGCGCGTACCTCTCGAT 3214 37 100.0 35 ..................................... GATGATGAATAGCCAATGGGACGCATCGCCGGCAG 3286 37 100.0 34 ..................................... GTGCTGTCGTCAAACCTGCATCGCCGGCACATGA 3357 37 100.0 34 ..................................... GCGTACATCGTGCCGGCCGCGTTCGCGCCGGACA 3428 37 100.0 36 ..................................... TTTCCATTCTTCCGCCGCAAGATGGAATTCGAGGAA 3501 37 100.0 34 ..................................... TTTCAGAGGCACTAGGAAAGCGAACGCGGCCACG 3572 37 100.0 35 ..................................... TGGCATGTCCGGTGCGACCGCCGTTGCCGATGCGG 3644 37 100.0 34 ..................................... GGGGTATTCGAGGCCGACCGTCTTGCGCACGAAT 3715 37 100.0 33 ..................................... ATCCGCATCAGTCTGGATCGCCGGATTCGGGAT 3785 37 100.0 34 ..................................... GAGGTGGTCTGGCCGAGCACCGCACTGGCAGCAG 3856 37 100.0 34 ..................................... CACTGCTTGCACTCGGCCTCGATGTCGGACTTGG 3927 37 100.0 36 ..................................... CGTATCCCACATCTTCCTGACTCGATCGGAAAGAGA 4000 37 100.0 35 ..................................... CAACGAAAATAGACATTCCGCCGCTCGACTTGTCG 4072 37 100.0 35 ..................................... GAGATGGGGCGGGTGCGGCGCAGCGAGATCCGGCC 4144 37 100.0 35 ..................................... GTGCTGTTCGGCCTGAGCCGCGAAGCGCTGCTGGC 4216 37 100.0 34 ..................................... CTGTGGGCGGCAGTCGGGCAGCCGCTGTTCGCCT 4287 37 100.0 34 ..................................... CCGATATCCATCGCGTAATTGTTGCTCATGAATA 4358 37 100.0 35 ..................................... AGCAGCAACTGCAGCCGGAAGCCCTGCGCATACGC 4430 37 100.0 34 ..................................... GGCGTGACGGTGCGGGAGGTGCGCGATGGCCATT 4501 37 100.0 36 ..................................... GGCTATGACCACAGCGGCCACGGCGAGACGCCGGCG 4574 37 100.0 34 ..................................... ATCAGCGACTCGCGCTCGCGGAAGCTCATCGTGC 4645 37 100.0 35 ..................................... TTCACCATCTCGTCGAGCAGCGTCCGCGTGATCGC 4717 37 100.0 34 ..................................... CGCGAGACTGACGCCCTGATGAAGCGCCGCATGG 4788 37 100.0 34 ..................................... GTCGTCTGCTGAACTGCGAACTGCGTGCACGGTG 4859 37 100.0 36 ..................................... GCCACCGAAGCCCATGCCAACGCGGCCGGCTACATG 4932 37 100.0 35 ..................................... CTCATCCGCAACGCCGACCTCGACGCGCTGCAGCG 5004 37 100.0 36 ..................................... CAGTTGCCGCCGGCGTTCGGGCACATGTCAAGACGC 5077 37 100.0 34 ..................................... GACAAGGACGGTGCGTGCCTGGTGGTGCAGTACA 5148 37 100.0 37 ..................................... TTGCTTTTTATGAGGACATGGGGCCGCGGCCGTCCAA 5222 37 100.0 35 ..................................... GGTGACGAGGCGTCGGTGCAGACGGACGGGCTGGG 5294 37 100.0 35 ..................................... AGCTACGTGCTGCTCAACGCGGAGTCCGATCTGAA 5366 37 100.0 35 ..................................... ATATGCCCGTCCAGCGTGCGGATCTTCTCGGCGAG 5438 37 100.0 35 ..................................... GAGACCGGCGACATCATCATGATCACCGGCGCGGG 5510 37 100.0 35 ..................................... TGTACAGCCGGCCGGCACCGTCGCCCACTCCCGCA 5582 37 100.0 34 ..................................... GTTACCCATCGCCGTCCAGCCGGGGCGCACGCGG 5653 37 100.0 34 ..................................... CGCAGATGCCCGCAAGTTGTTCCGCAGGCCTTCG 5724 37 100.0 36 ..................................... CTGGCACAACCCGAAGTCGCGCGCGAAGACGATCTG 5797 37 100.0 34 ..................................... CACGCGTACCGTAGCCCACCTACAGCAGGATCTG 5868 37 100.0 36 ..................................... TTGACGGCGACGGCGACGAAGTCGGGGGGTTCAGCC 5941 37 100.0 35 ..................................... TGCTTGCCCGCTTTGACGTCGGCGAGGAACGACGC 6013 37 100.0 34 ..................................... GCTTCGTGCGCCGGCAATCGAGGTAGGCCTGTAC 6084 37 100.0 35 ..................................... GGCCATCTTGTCGTCGAATCCTGGCGGCCCGGCGA 6156 37 100.0 36 ..................................... ATCATCTGGCACGACCTCGAGGCCGAGCGTCACGCG 6229 37 100.0 35 ..................................... GAGTAACCTGGAGACCCCGAACATGCTGCACACCG 6301 37 100.0 35 ..................................... TTACCGTCCAGTTTTTTTTGTACAGTTATCGCTTG 6373 37 100.0 35 ..................................... CCGCGTGACGAGTGACCATGCATCAGTAGGACCCT 6445 37 100.0 36 ..................................... GCATCATGATCTGCGCCGGCTTGGCGCTCGCGTGCG 6518 37 100.0 34 ..................................... TCGGAAATGCGGATCTGCCAGCCGTACGGCGACG 6589 37 100.0 35 ..................................... CCTGCCCTTGTCCGAATTACTCGGGCAACTCCGCA 6661 37 100.0 37 ..................................... CACCTGCTCGCCCCGCTCGAGAGTGCGCCCGAGGTAG 6735 37 100.0 34 ..................................... CAGCGTTTGGGGCGTAACTCGCGCCGTTCCCCCT 6806 37 100.0 35 ..................................... AAGTCGACGAATCGACGGTGTCGCGCATCGCCTCG 6878 37 100.0 33 ..................................... GACTACATGGGGATGATCACCGTCGTCACCGAT 6948 37 100.0 35 ..................................... AGTACAGCGCCACGAGGCCCGTTGCGGTCGTCCCG 7020 37 100.0 35 ..................................... TTGCGGCTACGACGTTCGAGGAGCGCCGCCAGCAC 7092 37 100.0 34 ..................................... CTGTTACCAACGTAGAGAGTGCGCCCGGTAGTGC 7163 37 100.0 36 ..................................... TCCCGGCACCAGATCATCGTGCGCGCCGGCAAGGGC 7236 37 100.0 35 ..................................... CCTACGTCACCGGCAGCGCGCCCGTCACACTCGGC 7308 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 101 37 99.8 35 GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Left flank : CCTCAACAGTTCGATTTCCACATACACCTCGTCTGTGATCACCCGGGCTCCAAATGGCCCGATCTTCTCAACTCGGTGTATCAACTTTCAATCGGCAGCCCGTATCAACTTA # Right flank : CCCTGGTGATGTGTTTCATTTGTCACCGATCGCCGTAATGGCGCCAAAGCGGGATCGGCGTAAAGGCGCCACGTGGTGATCGGCGTTATGGCGCCAGTGCCGGATCGGCGTAAAGGCGCCAGCCGGTGATCGCCGTATAGGCGCCAGCCGGTGATCGCCGTATAGGCGCCACCGCAAGATCGCCGTAAAGGCGCCAGGAGGCGGCGCCGAGAGGAAGAAGTCAGCGTTTCGAACGTCCACCCACCGGGCTTAACCTGCCGAGTTTTTTCGGCCGGAAGAGTCCATGAGCAAACGGAGGTTCGAGATGTATCAATACCGACAGGTCCTGGTGCGCATGCGCCAGGGAGACGCCGACCGCGACATCGAGCGCTCGGGGCTGATGGGGCGCAAGAAGCTCTCACGACTACGCAAGACCGCGCAGGATCACGACTGGCTGGCGGCGGAGCGTCCGCTCCCCGAGGACGCCGAGCTGGCGGCGGTGTTCCAGGAACGGCCGCTAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCCTCGGTGACGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.60,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA //