Array 1 44887-46745 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCM01000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3243_R1 NODE_9_length_170470_cov_1.21196_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44887 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44948 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 45009 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 45070 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45131 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45192 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45253 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45314 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45375 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45436 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45497 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45558 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45619 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45680 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45741 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45802 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45863 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45924 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45985 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46046 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46107 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 46168 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46230 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46291 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46352 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46413 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46474 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46535 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46596 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46657 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46718 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62857-64333 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCM01000102.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3243_R1 NODE_9_length_170470_cov_1.21196_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62857 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62918 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62980 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63041 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63102 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63163 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63224 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63285 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63346 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63407 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63468 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63529 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63590 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63652 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63755 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63816 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63877 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63938 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63999 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64060 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64121 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64182 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64243 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64304 29 96.6 0 A............................ | A [64330] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //