Array 1 191972-190477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAW010000003.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS29 YZU2038_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 191971 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 191910 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 191848 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 191787 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 191726 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 191665 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 191604 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 191543 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 191482 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 191421 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 191360 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 191299 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 191238 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 191177 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 191116 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 191055 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 190994 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 190933 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 190872 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 190811 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 190750 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 190689 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 190628 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 190567 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 190506 29 93.1 0 A...........T................ | A [190479] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209372-208612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAW010000003.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS29 YZU2038_003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209371 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 209310 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 209249 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 209188 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 209127 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 209066 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 209005 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 208944 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 208883 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 208822 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 208761 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 208700 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 208639 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //