Array 1 230529-227922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDD01000004.1 Shewanella algae strain CLS4 scaffold00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 230528 28 100.0 32 ............................ TTGCCGATATGGGATGGTCTTTCGAGTATCAG 230468 28 100.0 32 ............................ AACAATACCGGCTCAAAACTCGATACCATTAA 230408 28 100.0 32 ............................ AGTCACTAGCTTCGTTCCACTCAGCGCGAATT 230348 28 100.0 32 ............................ ACGGAAAGACGGTATGTCGGCCCCTAGCACGC 230288 28 100.0 32 ............................ TCCATAACTAATCACACCAACACAATAACACA 230228 28 100.0 32 ............................ GCTCAATCATATCAAACGCCTCCTTTTCTTCT 230168 28 100.0 32 ............................ AGAAGAATGCCCAGTCTGGCTCAGGCGTTGTG 230108 28 100.0 32 ............................ GTTGACCACTCGAACCTGCCTTTTTATTGACA 230048 28 100.0 32 ............................ AGTGGGTCACTGGTGTTTCTCTGGGCGCGTCC 229988 28 100.0 32 ............................ CCGTTCTGCGTCAAGAAACACACAGAGCGAGC 229928 28 100.0 32 ............................ TCTCCCTTCTGTTCCTCCTTATGTTGAGCCTG 229868 28 100.0 32 ............................ GAGCCGGGGGTGTTGCAATGAACGCCTCCAAT 229808 28 100.0 32 ............................ ATCAGGCACTGATGCCGGCCATTGAAATGGAC 229748 28 100.0 32 ............................ TTTAAGGCTGCGCCAGCGGTTATCACCTTTTT 229688 28 100.0 32 ............................ AAGAAAACCCGTGTAATCCGTCTGCCTGATAA 229628 28 100.0 32 ............................ ATTAATGGCACTGTCGCCCATATCCATGATTT 229568 28 100.0 32 ............................ TCAACCAAACCCGGTGGAATTGACGCGCCTTT 229508 28 100.0 32 ............................ AGTCAATGAACTGTTGGCGGGTTTCGTGATCC 229448 28 100.0 32 ............................ AGCAAACCCGCAGTGGCAGCGGCGGCGATTTG 229388 28 100.0 32 ............................ GACCAGGACGCCGCCATCATCAAGCGTTACGA 229328 28 100.0 32 ............................ CGTTACCGTTCGACGGCGGCAAGCCGCGACTA 229268 28 100.0 32 ............................ GTTCGGAGATTGCGCGGATGTACAGTGCTGCC 229208 28 100.0 32 ............................ GGTCGAACTCGATACACCCTCGCAAGCGCGTA 229148 28 100.0 32 ............................ AGCAGCCGACCCGGTACCGCCAGTCACCGAGA 229088 28 100.0 32 ............................ CATCTTGGCGTTGCTGGTCAGCACGGCCCAGA 229028 28 100.0 32 ............................ ATGTTCAAATCATCAGTATGCTCCTACGAAAA 228968 28 100.0 32 ............................ AACCCTCGATAAATCGCCGTTCAACCATTAAC 228908 28 100.0 32 ............................ ACTATCATCAAAGATGGCGGCGAAAGTCTCAC 228848 28 100.0 32 ............................ ATTGATAACCTCATCAGGCTGTTTGGTTTTAT 228788 28 100.0 32 ............................ TTAGCCTGATAGATGCCCTCCTCTATCAGCTG 228728 28 100.0 32 ............................ TAATCTAAAAGACTCTGCTGTTCCTCATTGCG 228668 28 100.0 32 ............................ TACTCGCACACCACTGGTAAAGCCTTCGATAA 228608 28 100.0 32 ............................ GCTGCAGGGTCACTACAGAACCGCAAATAACT 228548 28 100.0 32 ............................ AGACATGGGCCTGGCAATGTAAACGCGCTTAC 228488 28 100.0 32 ............................ AGATTGGGGCCACCTATTACTTTGCCGGTGAA 228428 28 100.0 32 ............................ CGTTGTCGGGTCTGTTACACAAACAGAACTGG 228368 28 100.0 32 ............................ CGTTGTCGGGTCTGTTACACAAACAGAACTGG 228308 28 100.0 32 ............................ TCAACCAAACCCGGTGGAATTGACGCGCCTTT 228248 28 100.0 32 ............................ TGAACAGCCCGCATACACGTTCCCGAATGGGG 228188 28 92.9 32 .GG......................... TGTGCGAGCAGCTTGTCGGTGCTGAAACAGAT 228128 28 100.0 31 ............................ TTGGCCATGTATGCCCTATCATTGGCAGGTT 228069 28 96.4 32 .........T.................. CTTAGTATTGTTTCGGCTCGCTGGTAGCCCAA 228009 28 96.4 32 ............T............... AACTGATGATTTTGCCCAGTCGATTGCTTGCC 227949 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 44 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CCGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCGGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCTTTTCGATTGCTACGGGCTGAGTCGCAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGGGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTGAAAATGGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTAT # Right flank : GTTCTTCTGGTGAATTGCACTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTAAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGCCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCAGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTCGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //